barSeed - Barley Seed Development Database

Probe CUST_40334_PI390587928

Source Contig U35_29823

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40334_PI390587928	Hv_44K_v2	AAACAATAAAATCCAATGCAGCCTGTCTCTGGTAGCCCGCCCCTTGCATGAAAAACTAGT	173	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.895	1.378	1.204	0.749	0.617	0.653
Raw	116.202	118.766	99.918	92.520	27.399	32.889

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56627.2	2864	2e-24	1896 - 1955	100	60 / 60	plus	None
MLOC	MLOC_56627.1	3255	2e-24	1872 - 1931	100	60 / 60	plus	None
MLOC	MLOC_56627.6	3334	2e-24	1889 - 1948	100	60 / 60	plus	None
MLOC	MLOC_56627.5	2785	2e-24	1865 - 1924	100	60 / 60	plus	None
MLOC	MLOC_56627.3	3340	2e-24	1895 - 1954	100	60 / 60	plus	None
MLOC	MLOC_56627.4	3303	2e-24	1895 - 1954	100	60 / 60	plus	None
JLOC1	JLOC1_36650.3	3234	8e-25	1981 - 2040	100	60 / 60	plus
JLOC1	JLOC1_36650.2	3535	8e-25	2005 - 2064	100	60 / 60	plus
JLOC1	JLOC1_36650.1	3498	8e-25	2005 - 2064	100	60 / 60	plus
Harvest21	ABC29316	331	3e-25	174 - 233	100	60 / 60	plus
Harvest35	U35_29823	331	3e-25	174 - 233	100	60 / 60	plus

Contig Sequence (331 bp)

>U35_29823 331 Hv_44K_v2
GAGCCTGGTACCTATACGGTTGCTGGAGTGGGAGAGCTTCATCTGGAAATTTGCTTGAAG
GATCTACAGAAAGACTTTATGGATGGTGTTGAAGTTGTTGTTTCCAGTCCGCCTGTTGTT
TCCTTCCGTGAGACTGTTCGCAAGTCTTGTGATCCTGTGAAGAGTGTGCCCAGAAACAAT
AAAATCCAATGCAGCCTGTCTCTGGTAGCCCGCCCCTTGCATGAAAAACTAGTCGATGCT
ATTGAGGATGGTCGCTTCGGTCCACGCACTGATCATGCGGTACGATCTGAGATCCTTTCT
AAGCATGGCTGGGATAAGGATCTCGGCGATA

Homology of Contig U35_29823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None