barSeed - Barley Seed Development Database

Probe CUST_40324_PI390587928

Source Contig U35_17853

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40324_PI390587928	Hv_44K_v2	TGCCTGTACTGATCATGTATGTTCTCAGCTGTTCTCACTTCAAATTTCAAGTCTAAAAAA	1169	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.128	0.214	0.497	1.739	2.052	1.946
Raw	55.423	145.031	293.661	1603.278	668.142	693.769

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39067.1	1475	2e-21	1320 - 1373	100	54 / 54	plus
Harvest21	ABC07672	1240	3e-25	1170 - 1229	100	60 / 60	plus	ABC07672
Harvest35	U35_17853	1240	3e-25	1170 - 1229	100	60 / 60	plus

Contig Sequence (1240 bp)

>U35_17853 1240 Hv_44K_v2
CCAGCTTCCCTATTTACGACCGCGAGAGGCTCCCGGGACCATTGGTTCTTCTTCTTCCCT
CGTCGCCGCCCGCCATCACCGGCCGTGTTGCGCTTGCGCGTTGAAGAGGAATCCGGCCGG
CCGTTGTCATCCTCCGCCGATAGATGGGGCACCGCGGGGACACCAGGCCTGTCAGTGGCG
GCGGGTTCAGTGAGAATGGTAAGTTTAGCTATGGTTATGCGAGCTGCCTAGGGAAAAGAT
CTTCCATGGAGGACTTCCACGAGACAAGAATCGATGGCGTCGATGGAGAGACCGTCGGGC
TGTTCGGTGTTTTCGACGGCCATGGTGGAGCTCGAGCGGCGGAGTTCGTCAAGCAGAACC
TTTTCAGCAACTTAATCAAGCACCCAAAGTTCTTCACCGATACCAAGTCTGCTATTGCTG
AAACTTTCACCCATACGGATTCAGAGCTCCTGAAAGCCGATACCGCCCACAACCGAGATG
CAGGGTCGACGGCCTCCACGGCCATTCTTGTTGGTGATCGCCTGGTGGTGGCAAACGTTG
GGGATTCCAGGGCCGTCATTTGTAGAGGTGGTGATGCTATAGCGGTGTCAAGGGACCATA
AGCCTGACCAGACAGACGAGAGGCAGAGGATAGAGGATGCCGGAGGCTTCGTCATGTGGG
CAGGTACATGGCGTGTAGGCGGCGTGCTTGCCGTTTCTCGAGCGTTTGGTGACAAACTGT
TGAAGCAGTACGTGGTTGCCGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTGG
AGTTCCTCATCCTGGCGAGCGACGGACTGTGGGACGTCGTGACCAACGAGGAAGCGGTGG
CCATGGTGAAGCCGATCGTGGACTCGCAGCAGGCGGCCAAGAAGCTCCTCGTCGAGGCGA
CCCGGAGGGGAAGCGCCGACAACATCACCTGCGTCGTCGTCCGTTTTCTCGACCAGCAGC
CCCCGGCGGCCACCAACGAACGTCCAACCCCTGTCGTGCTGGGCAAGTGAACATTCCTCA
TCTCCAACCCATGTCGTGCGGTCGTGCCGGGCAACTGAACATTCCTCTTGGAAGCGCGTA
GGTTCACAGGGCAATGCGTTGTGCAAGCAGTGTGTCTGATGGTGTAGCCCTTTGCGTGCG
TGTTTATTTGCTTCACTCCAGTTTACCATTGCCTGTACTGATCATGTATGTTCTCAGCTG
TTCTCACTTCAAATTTCAAGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17853 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48300.1	328	2e-170	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi1g33900.1	282	0.0
Arabidopsis v10	AT4G31750.1	311	2e-154	\| Symbols: WIN2 \| HOPW1-1-interacting 2 \| chr4:15364657-15367207 REVERSE LENGTH=311