barSeed - Barley Seed Development Database

Probe CUST_40321_PI390587928

Source Contig U35_17856

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40321_PI390587928	Hv_44K_v2	GCTGTGCTTCCGAGTTGGTAACATATATCACTTCATTCAAACAAGTGATTTCTTTACGCA	595	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52203.2	5269	2e-24	5046 - 5105	100	60 / 60	plus	ABC09656
MLOC	MLOC_52203.1	5501	2e-24	5278 - 5337	100	60 / 60	plus	ABC09656
JLOC1	JLOC1_33421.3	5311	8e-25	4888 - 4947	100	60 / 60	plus
JLOC1	JLOC1_33421.2	5286	8e-25	4863 - 4922	100	60 / 60	plus
JLOC1	JLOC1_33421.1	5596	8e-25	5173 - 5232	100	60 / 60	plus
Harvest21	ABC09656	671	3e-25	596 - 655	100	60 / 60	plus	ABC09656
Harvest35	U35_17856	671	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_17856 671 Hv_44K_v2
GTGCGGATGGTGATGTCCCCGAGAGTGGTCCTGCCAAAGATGAGGAGCATATTGCTTCGT
TCTTGCCTAAAAGATCAAAGAGACTAGTGAGGAGCATGGGTTAAGATAAGGAACCCGTTG
CTGCTTCTGATGTTGAGAAACCTGCAGATGCAGCTGAAAACAATGACAGCAATCATGCAG
AAGAGTTGCAAGACCAGACTCCTCCAGCGTAGTTGACCTATGGGCTGACCTGATGAGAAC
ATAAGATGCGAATGGCAAGACTCTAATTTGTGGTGTCTAGTAGGAGCATCAAAGATGGCA
GTTTATTGGCCCAGAGGAGGAGCTCTGGATCTGCTCAAGGTCTTACGCAGTTAATAAGTA
TTTAACTGTGTTGTGCAGCTTCTTTTGAGAAGCCTGAGACTGCAACCTCAGTGCAGTTGC
AGCCCAATGATGGCTGTTACCGCCAGCCCTTATCCCTAATGTTGGCGATGTGTCTAGCCA
TTTTGTAAATAAGCATTAGCAATGTTCCATCACATATAGGAATTATTTTACTGTGTAAAG
AGAGTAGGGACGTAGAGTTTTGTTAGGCCAAAAAGGAACATGGCAGGAAACATCTGCTGT
GCTTCCGAGTTGGTAACATATATCACTTCATTCAAACAAGTGATTTCTTTACGCAAAAAA
AAAAAAAAAAA

Homology of Contig U35_17856 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None