barSeed - Barley Seed Development Database

Probe CUST_40320_PI390587928

Source Contig U35_17857

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40320_PI390587928	Hv_44K_v2	TTCACCTTGTATACATTCAGATTCGCTGCCATATTTCCCACATATATTAACACCGATGCT	1208	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.250	2.274	0.609	0.544	0.942	1.093
Raw	16.640	25.040	4.977	6.772	2.709	5.056

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78026.1	1143	7e-23	1029 - 1089	98	60 / 61	plus	None
JLOC1	JLOC1_52009.1	1099	4e-23	1014 - 1074	98	60 / 61	plus
Harvest35	U35_17857	1293	3e-25	1209 - 1268	100	60 / 60	plus

Contig Sequence (1293 bp)

>U35_17857 1293 Hv_44K_v2
AGAAGAGTTGCAAGACCAGACTCCTCCAGCGTAGTTGACCTATGGGCTGACCTGATGAGA
ACATAAGATGCGAATGGCAAGACTCTAATTTGTGGTGTCTAGTAGGAGCATCAAAGATGG
CAGTTTATTGGCCCAGAGGAGGAGCTCTGGATCTGCTCAAGGTCTTACGCAGTTAATAAG
TATTTAACTGTGTTGTGCAGCTTCTTTTGAGAAGCCTGAGACTGCAACCTCAGTGCAGTT
GCAGCCCAATGATGGCTGTTACCGCCAGCCCTTATCCCTAATGTTGGCGATGTGTCTAGC
CATTTTGTAAATAAGCATTAGCAATGTTCCTATATGTGATACCAAAGCTACTCTAGCCCC
CACCACCTTGTCGATCGGCGCCATGGGCAACTGCCTGAACAAGGCGTCCACGCAGCAGCA
GCAGCGCGAGATGCGGCGGCGGCGGCACGGCCACGGCGAGAGGGTCGCGCCGGAGGAGAG
GGAGGAGGAGGAGGAGCTCAGGAGCATCGGCCAGGTGCTGCTGCAGGAGGAAGAGGAGGA
GGAGGAGGAGGCGCCGGCTGCGGCGTCGGCGGCCGGGATGAAGGTGAAGGTGGTCCTGAC
GAGGGCGGAGCTGGAGTGGCTCATGGCGCAGCTCAAGAGCGGCGAGCAGCGCCTCGAGGA
CGTCCTCCGCCAGATGGGCAACGCCCGCGACGTCGACGACAAGCCGCCGCGCGCCGACGG
CTGGCGCCCGCGCCTCGAGTGCATCCTCGAGTGCCCCGAGGCCGCCGACGCCACCTAGCT
CAACCTGCACGCGGCCGTTCTCGATCTCCCCTCCCCGGTCACCACCATCAGAGCTCGATC
TCCTCCATGAGCTACCAGCTTTCTTGCTTAGATCCGTCCGTGTGCATGGTCCATGGTGTG
ATCCACGGAGAGGCTTCTTGTTTTTTGTGTGTTTCTCTCCAAAGGATCCATGGAGTGGCT
TGATCTAGGATGCACACCAACTGTACTATGTAGCCCGTTAGAGTTAGTAGCAGCTTGATC
TCTTACTGGTGTTTGTTGTACTCGTGCGTGCGCTTTGCTCGTCCGCTTGTTTTGGTTTTT
CCCTCTATGTTCTGTTTGTAAATAGTGTGGCCTCACATGGCAACGTCTGCTGCAGTTTTG
CATCGGATCGGCTCGGATCAGCTGTGACAATTTTAGCTCACTTTGGTGGCGCAATCTACC
CTTTTGTTTTCACCTTGTATACATTCAGATTCGCTGCCATATTTCCCACATATATTAACA
CCGATGCTCTGTTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None