barSeed - Barley Seed Development Database

Probe CUST_40304_PI390587928

Source Contig U35_17863

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40304_PI390587928	Hv_44K_v2	ATATGGTAATGTTGATGATGCTCAACTCAGCAGCTCCCTCCTGCTGGAGTTCTGGTTAAA	1597	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.174	1.386	1.251	0.938	0.499	0.495
Raw	2145.180	3900.480	3122.737	3516.050	680.113	741.989

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44984.1	3110	2e-23	1056 - 1113	100	58 / 58	minus	ABC08795 ABC21368
JLOC1	JLOC1_29191.5	2809	1e-23	1870 - 1927	100	58 / 58	plus
JLOC1	JLOC1_29191.4	2784	1e-23	1845 - 1902	100	58 / 58	plus
Harvest21	ABC08795	1224	3e-25	1151 - 1210	100	60 / 60	plus	ABC08795
Harvest35	U35_17863	1671	3e-25	1598 - 1657	100	60 / 60	plus

Contig Sequence (1671 bp)

>U35_17863 1671 Hv_44K_v2
CTCCCTCTGTTTGCTTACCTGGAGAAAGTGGCAGCAAGGACAATGTCGCCCATTTCTCGG
ACATGACCGGTGTTTCCTGTATTAGGCCTGCATTTACTTCAAGTTATCAGCAAACTGTGC
CAACAGATCTGCTCCCAGCAAAGCCAAAACCACAGGTTACCCCTCTTACTCCAAAGGATT
TGATGCCTGTTCAGTTTAGTTCTGACCTTCCTGATCCTACCTCAATTCGTTTTGAGGGCA
TAGCCTCCATAACTTCACCAAATTTTGGTGATCATGCCAACAGAGTCAGCAATACTCCAG
GGCCCAAGGACATGAACAAGTTCCCAGTATTTAATGAACAATCTCGGAGCCAGCATGATG
TTCTGTTCCGCAATATTGATGGATACCTGCAGCACAGACGTCATCTTGCAGTTGACATGC
CCGCTTTTTCTGATAGCACTGTAAGTGGTAGTGTGGGAACTTCTCATCCGGATCAGTTCA
CAATAACCAAATACCAGAATGGCAGGTCGGGCAGCTCAGGTCTCTCAAGTACATCTGCTG
GTTTTCTGATGAATGGGAGCAGCAAAGAATTACGGGAAGGTCAGTTGAAGCCCTGTTCCC
ACAAAGCAAGCACTGAGAGTTCTGATCAGGTGAAGCGCCCCGGAGATGTCAAGCTATTTG
GGAAAATTCTGAGCCATCAATCATCCTTGCAAAGTTCTGGCTCATCATCGAATGTAACCA
GAAGCAAGCCTCCCGCGTCAACGGCAGCAGGATTGTTGGGCAGTGGAATGGATCGCATGG
TTTATTCATCTAGGCTCACAAACACCGCCCACTTGGGGCAGGACGAGCGAGTGGTGAGGA
GCTACACTCACCTGGATGGGAGCACAGTACAGCCCGAGTCGTCTTTGTTCAGGGCGGCGA
AATGTCAGAGATCATCACTGTCCAGCGTGCCATTTTACTCGGCTAAAAATGGCACACTGG
GCGTATTTGGAGAGTACCAACAGCCTTTGCGGCAGCAGCTGCCATCAGATCCGAAGCGGC
TGGAAAGCTATGCCGATCTCCAGAAGAGGAACGGAATGGAGCTCATCTCAGGGTTCCAGC
AGCAGCAGCAGCAGCCCGGGAAAGCCGCGCGGCTGGGCGGCGCCGGGATCCTCGTGAGCC
CCGTGTCGGACCCGGTGGCGGCCCTCAAGGCGCAGTACGGGTCGAGCTCCAAGTTCCTGG
GCCAGGACGCCGACCACCCCTGGAAAGACATAGGAAACAGGTAGCAGCAGCAGCACCAGC
AGGTAGCATTAGGCGGGGCAAATAGTGCATGCTCTTCTTGCTCTCTCTCCCTGTACCATA
TTTAGTTTTTGTAACTTGGGATGGAAGGAACTAAAACAACAGTAGGGAAAGCGAATGGCT
TTCCTGTCCATATCGTCGTCGTCGTAGGGCTTTCTTTTGTCGTGGGATTAACTCTTCATC
ATACTTGTTTTGGTAGCTTCTTTTTTGGATGTTGCCAGCAGTGGCTGTAGGTTTTGCTAG
AGGCGACAAAGGCGGTTTGTCGGTAGGGCTTTGTTATTATTTATGTATCCGGTTTTATTA
TGCATGCATGTAGAAACCTCACAGACAGATGGTTGTAATATGGTAATGTTGATGATGCTC
AACTCAGCAGCTCCCTCCTGCTGGAGTTCTGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g03550.1	1581	4e-116	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi2g38160.1	1751	8e-163
Arabidopsis v10	None