barSeed - Barley Seed Development Database

Probe CUST_40297_PI390587928

Source Contig U35_29841

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40297_PI390587928	Hv_44K_v2	CCTGATGGATGGATGATTGCTGCAAATCATTTCCAACATCTCTGTTTTCAATTATTCATA	96	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376217	3678	2e-24	3583 - 3642	100	60 / 60	plus	ABC29344
MLOC	MLOC_12194.2	3467	2e-24	3349 - 3408	100	60 / 60	plus	ABC29344
JLOC1	JLOC1_8174.1	3362	8e-25	3244 - 3303	100	60 / 60	plus
Harvest21	ABC29344	205	3e-25	97 - 156	100	60 / 60	plus	ABC29344
Harvest35	U35_33634	543	3e-25	315 - 374	100	60 / 60	minus
Harvest35	U35_29841	205	3e-25	97 - 156	100	60 / 60	plus

Contig Sequence (205 bp)

>U35_29841 205 Hv_44K_v2
GCGGGCCCATTTTTGTTTCTAGTCGGTCACTGAGGTGTGACTGGACTGCCACACTCGTAT
TCTTTTGGCCGTGGGCGTTGTAAATACTAGTAGTAACCTGATGGATGGATGATTGCTGCA
AATCATTTCCAACATCTCTGTTTTCAATTATTCATATAAATGAAATGACTTGATCTTTTT
TTGCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_29841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None