- Probe CUST_4028_PI390587928
- Source Contig U35_49314
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4028_PI390587928 | Hv_44K_v2 | TTAGAAAAAAGGAGTATGCAGATGCTAGCATACAACAAACCTCTTTTTTCTTGGCACCCC | 43 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.074 | 2.261 | 1.286 | 0.757 | 0.415 | 0.388 |
| Raw | 37.525 | 64.739 | 32.112 | 32.607 | 4.770 | 5.272 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80134.1 | 390 | 2e-24 | 20 - 79 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_53365.2 | 3501 | 8e-25 | 3269 - 3328 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49314 | 481 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus |
Contig Sequence (481 bp)
>U35_49314 481 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAGGGTAAGAACTGGACTACTGGAGCGGGGTGCCAAGAAAAAA GAGGTTTGTTGTATGCTAGCATCTGCATACTCCTTTTTTCTAACCAGCATCTGTGTATTC TGTAGAATTACCTTCCTCCCAAATTAGTTGTCTTAGATTTGTTTAGATACGGATGTATCT AACACTAAAACATGTCGAATCTAGACAAATCTGAGTCAACTAATTCTGGAAGGAGGGAGT ACTTCCTAGATTTGCCACGTCAATTCTCGGAAAAAAAATTCCTGCTGCTATTCCAAGATT TATGCCTGGAGAACTTGTGTCCTCAAATATGTAAAGTTTGTTACCCTAAGTTGAAGATGC ACAAACTCTAAGCATATCTACCTCCACTTCACATCCATTGTGTGTGGGATCCAGACATCA GAAGTCGCCACCCTAAATTCTACTGCCACATTTTAGAGCAATGAACATAATCTACTCTGC T
Homology of Contig U35_49314 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |