barSeed - Barley Seed Development Database

Probe CUST_40289_PI390587928

Source Contig U35_17870

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40289_PI390587928	Hv_44K_v2	TGGGACGAATTGCAAGTTTATCTAGCCTGACGTAAATCCAAGTTGCTAGATTGTCAAAAA	1447	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.208	1.445	1.057	0.755	0.348	0.373
Raw	536.852	1009.096	646.900	728.887	119.065	138.136

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65475.6	2597	9e-22	2540 - 2594	100	55 / 55	plus	ABC08695
MLOC	MLOC_65475.5	2303	9e-22	29 - 83	100	55 / 55	minus	ABC08695
JLOC1	JLOC1_43091.10	2660	5e-22	2587 - 2641	100	55 / 55	plus
JLOC1	JLOC1_43091.9	2294	5e-22	2221 - 2275	100	55 / 55	plus
JLOC1	JLOC1_43091.8	2253	5e-22	2180 - 2234	100	55 / 55	plus
Harvest35	U35_17870	1507	3e-25	1448 - 1507	100	60 / 60	plus

Contig Sequence (1507 bp)

>U35_17870 1507 Hv_44K_v2
TTAGCCCAACTTTCATCTAATCTTGCCAGTGCCAGTTTCGAAACACGCTGGTCAACAGAG
CGGTATTTAGATGAAGAGATCTAAGTTGATTGTTGTTTCTCCTTGGGGAGAGGTGGTTGG
TAGTATGTATTGTCCATTTGATCTTAATGGCGTGAGGACAGAGAACCAAATGTCTTGGCC
TCTAAGGAGCTGCTTGACACTACAACACTGGAGTCAATCACTAACACTTCCTCTCCGCCA
CAGCCTACACCATTCCAGCCAGGTATGTTGTCGTCGAAGGACGCTTCCTCCACCCGGGCA
GAGGAGGTGACTCACTCGCTGACGCCACCCATTTTGGCTCGGAAACCTGCCGGTTGGAAT
CATCAATTTTTCATAAGAGTAGATCTTGGAGGATCTTTCCACACGTATCCTGAGCTGGGT
GGGCCGTTCCGGAGCTTGGAGGAAGCTAAGAAGGCTATACTCTGCCGCCTTGATAAACTG
CGTGATCCAAAAATGAGCACAAACGATGGGCTTTCCAGTTCGGAGATTGCTATACGAGAT
GCTCTTCACTGGCCAGATGGCACACGCAAGTATTCTTCAAGATCCAATCCGGACGAAGAT
CATATGGGGCTACTGGTTCAAGCTTTGTTGGACAAGTACAATGAGGAGAATAATCTTTTG
GAGGATGATGCATATCATGTTGAAAAGGTTGTGAGCTTCCAAGAAGTTTATGAGGGCAAA
GGTGGCTGGTACTATCATCTGAATTGTACTAGAAAAACTAAAGGTGGCGTCGACAATCTC
TTCTTTGCCGAAGTCTTGAGAATGAATAGAGGACTACAATTCGAGCTCACCTGTCTCCAT
ATGGTTGAACCTGCTGTTGATAACGGTACATGCTATGGTTGTAAAAAAGCTAATGTTGGT
ATGAAGCACCCCATTGATGCTGGTAAATACAAAGGTGGCCACGATCCCTCGTGGCCACAA
CGACCGCGCGTGGTTCTTCCACCGGATTTGCCTGAGGGTTTTGATGCTAAGATGAAAGCT
ATGGAAGAAAGGATTAGATATCAATTCCAGGACTCTGATGTGTTGATACCGGATGCTGGA
AAAACTGCTGCTGCTGACGGTTTGGACAAGAGCCAGCTGGGAAGAAGGGGCTTCCCAGCT
GCTGATGCTAGGATGAACAAGGAAAGGATTAGATATGTATACGGGGACCGTGATGTGGCA
AAACCGGATGCTGGAAGGCCTGCTGCTGGTTTGAAGGGAAAGTGGGGGAAGTACGTTGTA
CCGCCGATGCGTCTGAAGGTTTGAGAAGATGGACCTGCCTGTTTATCAGTTTGTAATTAC
TGTCTGATGGTCTAAAAAAAGTAGCAATGGGACAGTTAATTTTATTTTGCATGTCTTTGA
ATCCGAGTAGCTAGATCAGCGGTTTCTAGCATGTGTGGTACGTACATCCAACATCCAAAT
ATGCAAGTGGGACGAATTGCAAGTTTATCTAGCCTGACGTAAATCCAAGTTGCTAGATTG
TCAAAAA

Homology of Contig U35_17870 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None