barSeed - Barley Seed Development Database

Probe CUST_40288_PI390587928

Source Contig U35_17871

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40288_PI390587928	Hv_44K_v2	TTCATCGATGATCTGCTAAACAGAGCTTTTGTTGCCAACAAGCTGAAGCTGGCTCAAAGG	810	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65475.6	2597	2e-24	992 - 1051	100	60 / 60	plus	ABC08695
MLOC	MLOC_65475.10	2534	2e-24	1531 - 1590	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.11	2408	2e-24	1405 - 1464	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.12	2516	2e-24	1591 - 1650	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.2	2311	2e-24	1387 - 1446	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.5	2303	2e-24	1381 - 1440	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.14	2445	2e-24	1329 - 1388	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.1	2760	2e-24	1644 - 1703	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.16	1036	2e-24	36 - 95	100	60 / 60	minus	None
MLOC	MLOC_65475.8	2313	2e-24	1313 - 1372	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.7	1500	2e-24	1345 - 1404	100	60 / 60	minus	ABC08695
MLOC	MLOC_65475.4	2211	2e-24	1211 - 1270	100	60 / 60	minus	ABC08695
JLOC1	JLOC1_43091.10	2660	8e-25	919 - 978	100	60 / 60	plus
JLOC1	JLOC1_43091.9	2294	8e-25	864 - 923	100	60 / 60	plus
JLOC1	JLOC1_43091.8	2253	8e-25	864 - 923	100	60 / 60	plus
JLOC1	JLOC1_43091.7	2670	8e-25	919 - 978	100	60 / 60	plus
JLOC1	JLOC1_43091.6	2635	8e-25	919 - 978	100	60 / 60	plus
JLOC1	JLOC1_43091.5	2272	8e-25	864 - 923	100	60 / 60	plus
JLOC1	JLOC1_43091.4	2237	8e-25	864 - 923	100	60 / 60	plus
JLOC1	JLOC1_43091.3	2237	8e-25	864 - 923	100	60 / 60	plus
JLOC1	JLOC1_43091.2	2281	8e-25	864 - 923	100	60 / 60	plus
Harvest21	ABC38254	417	3e-25	218 - 277	100	60 / 60	plus
Harvest21	ABC08696	1343	3e-25	811 - 870	100	60 / 60	plus
Harvest35	U35_17871	1001	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (1001 bp)

>U35_17871 1001 Hv_44K_v2
GCTAGCACGTCCTCTGCCGCACCTCTCCCCCCAATGGCGCAGCTTATCCGAAGTCGCGAC
CGTGACAACCGACCAAAGCGCCCCTCTCCCCTCCGCTCCCCTCCTCCGACGCCCGGAGGC
GACCACCAATCCACGTTCCTATTTCATCGTCCCGACCTAATTCTTCTTCCCGACGGCCGA
CGAATCTCTATCTACGAAGATAGGCATGGAGTTCTCGTCACCGATGCCCTCCGCTGGTCG
ACACGACCCGTCGAAGATGTCTACATGGAAGTCCTCTACGACCTCCAGACGAGTCCTCCC
ATCGCGGAGCCCGTCCGACGGAGCCACCGCGGCCGAGATGCCCCCCAACCCCCTATCCGA
TGTATTCTTCCTGACAAGCGAATAATCCATGCCTACAGTGATAGGCACGGGGTTCTCGTC
ACCGACGACATGGATGGGTCGACACGACGTGTCGAGGATGTCTTCAGGGAAGTCATCTCC
GACCTGCCCCACTATCGTCCACCACCCACCTTGGCGAAGAAGCCCGTCCGACGCCACCGC
CTCGGTGGCGATCCCCATAACCCCCTTCTTCTCCTATGTCTTCTTCCTGACGACCGAATA
ATTCATGCCTACAATGATATGTATGGGTTTCTCGTCACCAAAGACACGAAAGGGTTGACA
CGGCCCGTCCAAGATGTCTTCAGGGAAGTCCTCTACCACCTCTGGATGAGGCCCTGCGAT
CCTCCACCGCCGGTTGTTGATGCCGCTGAGGAAGATGAGCCTGCACCTCAACAAACGGCC
ACTCCAAGCCCTGATCCATCCAGATCTCAATTCATCGATGATCTGCTAAACAGAGCTTTT
GTTGCCAACAAGCTGAAGCTGGCTCAAAGGCGTGAGGACAGAGAACAAACTGTCTTGGCC
TCGAAGGAGCCTCTTGGCACTACAGCGCTGAAGGAGTCAATCACTAACACCTCATCTCTG
CTGCAGCCTACACTGCGCGAGGACGGAGAACCAAATGTCTT

Homology of Contig U35_17871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None