barSeed - Barley Seed Development Database

Probe CUST_40285_PI390587928

Source Contig U35_17874

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40285_PI390587928	Hv_44K_v2	TTCCACAAGACGCAGCTGCTCTTCGTTTCCGGAGACCGAGAAGTCTTTCCTCAAGCAGCA	476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365384	693	2e-24	435 - 494	100	60 / 60	plus	ABC10354 ABC37717
MLOC	MLOC_21917.2	431	2e-24	160 - 219	100	60 / 60	plus	ABC10354 ABC37717
JLOC1	JLOC1_15199.1	509	8e-25	160 - 219	100	60 / 60	plus
Harvest21	ABC10353	749	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_17874	591	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_17874 591 Hv_44K_v2
CCACTCGCCGCCACCTCCATGCGAAAAAACAGATCACCACCCTCCCCATCCCCTCGAGCT
CCAGATCTTCCCCGTCGACCCTCCCCGTCGACCCTCCCCGCGCGGCGCCTCCCCGTCCGC
TTAGCAGGACACACATCTTCTTCTTCCCCCTCCGACTCCGAGATCCAAACAACCAAACTG
ACAGCAGCCCAGATCCACCCACCCCACCCCTCTCGCCCCCACCGGTGCGTTTAGCGGCGG
TCGCCGGAGAGGTTTCCACCCGCGGCGCCCATGGGTTTAGCGGCGGGCGGCGGCGAGACG
AGATGCTGACCAAGTTCGAGACCAAGAGCAACCGGGTCAAGGGGCTCGCCTTCCACCCGT
GGCGCCCATGGATCCTCGCGAGCCTCCACAGCGGGGTCATCCAGATGTGGGACTACCGCA
TGGGCACCCTCCTCCACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCC
ACAAGACGCAGCTGCTCTTCGTTTCCGGAGACCGAGAAGTCTTTCCTCAAGCAGCANAAG
GTTTTTGCTCAGGACTGACGAGGCTTGTGTGGAGTTTCTGGATTGATGACA

Homology of Contig U35_17874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None