barSeed - Barley Seed Development Database

Probe CUST_40284_PI390587928

Source Contig U35_17875

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40284_PI390587928	Hv_44K_v2	GAGAAGTCACCAGTACGAGGCTACAAATTCAGTTTTGGTCGATGATGACCGAGAAGTCTT	656	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21917.4	727	2e-24	385 - 444	100	60 / 60	plus	ABC10354 ABC37717
MLOC	MLOC_21918.1	809	7e-23	466 - 526	98	60 / 61	plus	ABC10354 ABC37717
JLOC1	JLOC1_15199.7	814	8e-25	452 - 511	100	60 / 60	plus
JLOC1	JLOC1_15199.2	747	8e-25	385 - 444	100	60 / 60	plus
Harvest21	ABC10354	922	3e-25	657 - 716	100	60 / 60	plus	ABC10354
Harvest35	U35_17875	922	3e-25	657 - 716	100	60 / 60	plus

Contig Sequence (922 bp)

>U35_17875 922 Hv_44K_v2
GCATCCCCTCGAGCTCCAGATCTTCCCCGTCGACCCTCCCCGTCGACCCTCCCCGCGCGG
CGCCTCCCCGTCCGCTTAGCAGGACACACATCTTCTTCTTCCCCCTCCGACTCCGAGATC
CAAACAACCAAACTGACAGCAGCCCAGATCCACCCACCCCACCCCTCTCGCCCCCACCGG
TGCGTTTAGCGGCGGTCGCCGGAGAGGTTTCCACCCGCGGCGCCCATGGGTTTAGCGGCG
GGCGGCGGCGAGACGAGATGCTGACCAAGTTCGAGACCAAGAGCAACCGGGTCAAGGGGC
TCGCCTTCCACCCGTGGCGCCCATGGATCCTCGCGAGCCTCCACAGCGGGGTCATCCAGA
TGTGGGACTACCGCATGGGCACCCTCCTCCACCGCTTCGACGAGCACGACGGCCCCGTCC
GCGGCGTCCACTTCCACAAGACGCAGCTGCTCTTCGTTTCCGGAGATACAACAACCTTGT
TGTTGCTGTTGCTGGGCGCGCGCAGGTCAGGCGTGATTCAAGGCTCACGGGGAGAGATGA
CAAGCGACAATTAGACATGAGTATTTTCTGTTGCATGCTCCCTGCATCTGCTATCTGCAT
GCATGCGAGACTTCAACTGTGGGCACGTTAGCTGATTTGAACTATTGTTTTCTGATGAGA
AGTCACCAGTACGAGGCTACAAATTCAGTTTTGGTCGATGATGACCGAGAAGTCTTTCCT
CAAGCAGCAAAAGGTTTTTGCTCAGGACTGACGAGGCTTGTGTGGAGTTTCTGGATTGAT
GACAAGGCTGGTGTCTCGGCCTGATTCTTTGTTGTAGAATAGTTTTGCTTGGCACTTGCT
GGTTCTTGCAATGTAAAGATCTGCACTCTTGGAATGAATGGTTGTAATGTTATATTTTGG
GCTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17875 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None