barSeed - Barley Seed Development Database

Probe CUST_40274_PI390587928

Source Contig U35_29855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40274_PI390587928	Hv_44K_v2	GGAGAAAAAACTTGGAGCAGGTATTTGGCACCAAAAAGTTGCTCTGGTTTCTCCCTATGT	437	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369813	1110	2e-24	859 - 918	100	60 / 60	plus	None
MLOC	MLOC_68301.2	669	2e-24	146 - 205	100	60 / 60	minus	None
MLOC	MLOC_68301.1	1303	2e-24	589 - 648	100	60 / 60	minus	None
JLOC1	JLOC1_45178.1	834	8e-25	369 - 428	100	60 / 60	plus
Harvest21	ABC29375	500	3e-25	438 - 497	100	60 / 60	plus
Harvest35	U35_29855	500	3e-25	438 - 497	100	60 / 60	plus

Contig Sequence (500 bp)

>U35_29855 500 Hv_44K_v2
CCACTTCAGAGGAGCAAGGACATGCGCCTAGATATTGCTCTCGTTGTCAAAGTGGCAAAC
CTCCACGTTGCCATCACTGTTCTGTCTGTGACAGATGCGTACTGAAAATGTATATCACTG
TGTTTGGGTAGTAAATTGTGTCGGAGCAAGGAATTACAAGTACTTTCTCCTTTTCCTGGT
GTATACTTTCCTCGAGACTGTGCTGGATGCATTGGTGCTACTTCCAAGCTTTATTATCTT
CTTTCGTGATGGAAGTGGGCGCCCCAGCTCAGCTGGTGATATTGCCATTCTATTTCTTGC
TTTCGTTCTAAATTTGGCGTTTGCGCTGAGCCTCCTTTGTTTCATATGCATGCACACGTC
TCTTGTTGCCAGTAATACGACTTCTATCGAGGTATATGAGCGAAAGAAAACATGCTCATG
GGAGTATGACCTANGATGGAGAAAAAACTTGGAGCAGGTATTTGGCACCAAAAAGTTGCT
CTGGTTTCTCCCTATGTACA

Homology of Contig U35_29855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g28460.1	304	6e-59	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	None
Arabidopsis v10	None