barSeed - Barley Seed Development Database

Probe CUST_40254_PI390587928

Source Contig U35_4468

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40254_PI390587928	Hv_44K_v2	GTACTGTTTCCTCCTTGCTTCGCTCATGTAAATACATATGGATCAGTTGCTTTTGGCGCA	657	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.199	3.928	1.189	0.791	0.145	0.268
Raw	796.538	1244.980	310.587	361.067	20.237	43.843

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71354.2	698	2e-24	515 - 574	100	60 / 60	plus	ABC11982
MLOC	MLOC_71354.1	1021	2e-24	838 - 897	100	60 / 60	plus	ABC11982
JLOC1	JLOC1_47421.1	1023	8e-25	819 - 878	100	60 / 60	plus
Harvest21	ABC11982	904	3e-25	666 - 725	100	60 / 60	plus	ABC11982
Harvest35	U35_4469	826	3e-25	588 - 647	100	60 / 60	plus
Harvest35	U35_4468	717	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (717 bp)

>U35_4468 717 Hv_44K_v2
GCATATAACAGCAACTACTCCGAGCACTGCAGTGAAGTGAGTAAGGTGCTGTACACAGAG
AGAGAGAGAGAGAGACGATGGATCGGAGGAAGATCAGGGTGCTCCTAGTGGAGGACCAGG
AGATCCACAGGGTTGTGGCGAGAGCGGTGCTGAGGGCGGCCGGTGTGGAGGCGGACGAGG
CCAAGAACGGCGCCGAGGCGGTGCGGCGCGTGCGGGACGGCGGCGCGGGCGCGTATGATC
TCATCCTCACGGACAAGCAGATGCCGGTCATGGACGGCCACGAGGTATATATATACATGC
ACCCCCGCTGCGCGCGTCAGCCCAGGCCGCCTGATGAGTACGTGTGCGTGTGGCGCCGCC
GATCACGCGCGTGCATGCAGGCGACGAGGCAGATCCGGGCGATGGGGGTGACCACGACCA
TCGTCGCCGTGTCCAGCGACAGCCTCCCGTCGGATGTCCAGGCCTTCATCGCCGCCGGAG
CCGACGACTTCACGCCCAAGCCGCTGACCAAGGAGAAGCTGGGCAACATTCTCTCCAAGT
TCGGGCTTGCGTAGCGGCCATTAACAAGTGCAGTGCTTAGCTTGGCTCAGGATGCGAACA
TGCTTGATTCCTGCAGATGACGAGGCACTGGTTCCCGTAGATGGATTAGTGCTATCAGTA
CTGTTTCCTCCTTGCTTCGCTCATGTAAATACATATGGATCAGTTGCTTTTGGCGCA

Homology of Contig U35_4468 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None