barSeed - Barley Seed Development Database

Probe CUST_40252_PI390587928

Source Contig U35_4470

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40252_PI390587928	Hv_44K_v2	GTTTGCATGCATGTGCTAGAACTTGACTTAGCATGACTGCCAGTTCAAACTTGCAAAAAA	1005	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.129	1.171	1.104	1.014	0.509	0.481
Raw	2429.480	3969.930	3257.980	4586.510	823.326	849.093

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_4470	1076	3e-25	1006 - 1065	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_4470 1076 Hv_44K_v2
CAGCTGCTATGTCTGGTGCTCCCCCTGTTCCTCCTAATGAGGAAGAAATTCGCCGTTCAT
TAACATCTCTGGCGGCAACCCTCAGAATGCAGCCTGGTACAGTTGCTGGACTGCAGTTGC
CCCAGACTATTCTGAATCCAAGCTTGATGACCAGTTTGTCAGATGTTGAACCCAGTCAGT
GGTCTTGGGTACAGCAGCAACAGGCAGGAACAGCCCAACCCACACAGCAGCAGCAGTCAG
GAACAACCCAACTTGCACAGTCTGAACAGCAAGCTCCCCAGCAGACATTGCCGGCACCAT
CAACGGCAGTTGGTACTAGTAATGGCAACCCAGCACCCCAGTTGGTCGGTCAGACCGCTG
CTACATCAGTGGTTACCACACCACCGCCTTCAGAAAATAAGAAAGTAGAAACCAAAGCCA
AAGATAGCGATGGCGAACAAGATGGCGACAAGAATAAAAAGGGCAACAAGGAGGAGTCCA
AGGCACTGAAGATGTTTAAACTCGCGCTCGCCGACTTTGTGAAAGACGCCCTCAAACCTA
CGTGGAAAGAGGGCCAGCTGACCAGAGAGGTTCACAAGACCATAGTGAAGAAGGTCGTCG
ACAAAGTCACGAGCACGGTTGAGAACATCCCTCCAACAAAAGAGAAGATCGATGTCTACA
TGTCCTACTCGAAAGAAAAACTCAGCAAACTTGTACAGGCATATGTGGGCAAGTATGTCA
AGGCGTAGCCCGCCGGCCAAAATGGCGACATCTGCGCCTGTTTTTTGTGCCTCGTGCGAC
AGAAAGATTGGAAAGCAGGGTTTATTTAGGTGGCAAGGGTTTCTTTTTGTTCTGTTTCAG
GCGCCTTGTGCAAATGTTGCCGAGTGTTGTATCATCATCGTCTTCTTCTTTTGTACAACA
ACACCATTTGAAACATGAACCTTCTGTAGCGGTAGATAGATATAGGTTATGCAAAAGACG
TGGGTCGGTCGGTCGTCTTCTTCATGAACACAAGGCGTGTTCCGTGTTTGCATGCATGTG
CTAGAACTTGACTTAGCATGACTGCCAGTTCAAACTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None