barSeed - Barley Seed Development Database

Probe CUST_4024_PI390587928

Source Contig U35_13389

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4024_PI390587928	Hv_44K_v2	CGTAGATGCGGATTCTGAAGCCGAAGGTGAGGGTACTGATGCCGAGCCTGACGCTCTGGA	686	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71715.3	2348	2e-24	681 - 740	100	60 / 60	plus	ABC19552
MLOC	MLOC_71715.2	1964	2e-24	693 - 752	100	60 / 60	plus	ABC19552
MLOC	MLOC_71715.1	2544	2e-24	725 - 784	100	60 / 60	plus	ABC19552
JLOC1	JLOC1_47678.1	2642	8e-25	686 - 745	100	60 / 60	plus
Harvest21	ABC30412	681	3e-25	622 - 681	100	60 / 60	plus
Harvest35	U35_13389	746	3e-25	687 - 746	100	60 / 60	plus

Contig Sequence (746 bp)

>U35_13389 746 Hv_44K_v2
TCGAGCACTGTTGGCCTTGGAACCCACCCCCTCTATCGAGGAGAGCCCCCTTGCAGAACC
AGTAACCCGCACTGACCCCCGCTCCGATCTCCCCAATCCCCTCCAAATCCCTCGCCGGAA
CCCTAGCCCCGCGCCGCCGCCGCCGCCATGCCTCCGCGCCGCTCTAAGGGAGGGGCCGGG
GGCCAGCCCGACTCCGAAGCCAGCGACGCCGAGCCCGTGGAGACCGCGGTCGACGCCATG
TCCGAAGACGAGGCCGACGACGGCAACTCCAACGAGGACTCCGCTGAGAGCGGAGCTGAC
GATACGGACGGCGAGGCCTCCAAGGAGGAAGCCGCCGATACCAAGGCCGAGGAGATGGAT
GCGGAGCATGAAGAGGAAGCTGGCGCAACCAAGGCCGAGGAGATGGTCGCCGAACCTGAA
GCCAATGGTGCAGATGCGGGGACCAAGGTCGAGGCGGCGGAGGCCAAGGTCGAAGAGGAA
GCCGCCCAGAGCGACTCTGAGCGCAAGGCAGGTGCCCGAGAAGCCGATCCAGAAGCGGAG
GCAGAGGAAACCGACGGCGAGAATGAAGAGCAAGCCGCTCGGACCGACGGCGGGAGTGGA
GAGGAAGCTGCCGGGACTGTTGGCGAGGACGAAGAAGAAGCCGCCGGCACAGACGGCGAC
AACGCCGCTGAGGTTGGTGGCGAGAACGTAGATGCGGATTCTGAAGCCGAAGGTGAGGGT
ACTGATGCCGAGCCTGACGCTCTGGA

Homology of Contig U35_13389 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None