barSeed - Barley Seed Development Database

Probe CUST_40249_PI390587928

Source Contig U35_4473

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40249_PI390587928	Hv_44K_v2	ATGTGATTGATTTATCCCGTATATGCCGTTCACTGCGGCAAGTAATGAAGTGGGAACAGC	1273	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.042	1.113	1.228	0.902	0.288	0.323
Raw	75.280	131.665	121.400	145.177	16.583	19.394

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_4473	1377	3e-25	1274 - 1333	100	60 / 60	plus

Contig Sequence (1377 bp)

>U35_4473 1377 Hv_44K_v2
GCATAAGCGCAGCACCTGCGCGTCGCGGAATCCGACAATCCTCCCGAGTTCGAATCAGAG
ATTCCCCACCTCTCTCGCACGCTGTCCCTCCGAGAGGAGGACGACGGAGGCGCGGCTACC
GGAGCTGACTGATCGGCGGCTCTAGTACGGCCAGGATGCAGCCGAATCCCGCCGAGGCCA
TGGAGGTCTCCGCGCCGCCAGAGGGCGAGGCGCCCAAAGATGCGGGGCCGTGGCTAGGGT
TCTGGGAGGTGTCGCGGCGGCGGTTGACCCCCGACGACCCCTTCTTCGCCGCCGGCGACA
TGGAGCGCGAGCTACTCGCGAAGCACGTTGCTCTGGATCTCTCGGATGATGACAGGTACC
AACTTGAGAAGATGGATGTGGCGAGCGTCAGCACGGTGTGTTGTCCTATTGCTGGTTGTG
GTGCCCATCTAGATTGTTTGGAGGACTTTGAAGACCACTACAGCACTCGGCATACTGCTT
CTTGCTCTGTATGTTCAAGAGTGTACCCAACATCAAGGCTGCTGAGTATTCATATTTCTG
AGGCGCATGATTCCTTCTTCCAAGCAAAAGTCGCTCGTGGTTTTCCGATGTACGAATGTT
TGGTGGAGGGTTGTGGGGTGAAGTCGAAGACGTACAAAAGTCGGCAGCAGCATCTTGTTG
ATACGCATCAATTTCCTAACTCATTTGAATTCTTCAAAAGGGCACAACCTTCCCAGCGGC
ACCGTCAGAAGTATCATCGAAGGCAAACTGCTTATAAGGGGGAAGAGACAAGGGATACTG
TCATGGACGTTGATGGAAAGAACCCAAGGCAATCGAAATCGAGATATCGACCGAGGCAAG
GCGATCATAAGGAGCCGAAAGAAAATGAACATGATGGCAAGGAGTCGAAAGAAAATGAAC
ATGACCGCAAGGAGCCGAGAGAAAATGAAAATCACCAGAAGGAGGCCAAGGAGAGCGACA
TGGAGGTGGAACAGAAGATTGATGAACTCTCCTCGGCTGTATCACGGCTGAGTACTGCAG
ATTCGGTGCCCTCGAGCGTAACCTTTGGCCATCGTCGTGCTCGTGGTCTTACTTTTGTCC
CAAGGTCTATTAGGCAGAACAAGCAGGCCTCTCAGCCAGAAGCAAATTGACAATTCTTCA
GCAGATTATCAATCTCGAATACGGATTTCCCATTGTACTTGGACGTTTAAAGTTTCCACT
ATGTTTTATCATGATCGTTGTTTTTTTGGCGTTGCCTATTTGGTCTTGTAGCTGCTGTCA
TCTTTACTTACGGATGTGATTGATTTATCCCGTATATGCCGTTCACTGCGGCAAGTAATG
AAGTGGGAACAGCGGCCGCTCGAGCCTCATCGGAGGGCCCAATTCGCCCTATAGGAG

Homology of Contig U35_4473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g30484.1	307	1e-152	protein\|ZOS11-03 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi4g18830.1	305	5e-180
Arabidopsis v10	AT5G14140.1	264	3e-84	zinc ion binding;nucleic acid binding;zinc ion binding \| chr5:4561539-4563513 FORWARD LENGTH=264