barSeed - Barley Seed Development Database

Probe CUST_40244_PI390587928

Source Contig U35_4478

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40244_PI390587928	Hv_44K_v2	GATGTAGTCGGATAAACCTTCATCCGAATTGGAGCATGCTGACATTGTTTGTCGACTCAC	98	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.076	0.593	0.727	1.252	1.038	1.094
Raw	4.804	79.791	78.550	213.363	59.350	72.757

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5271.2	2887	2e-24	2762 - 2821	100	60 / 60	plus	None
JLOC1	JLOC1_3387.2	3330	8e-25	3128 - 3187	100	60 / 60	plus
JLOC1	JLOC1_3387.1	3566	8e-25	3364 - 3423	100	60 / 60	plus
Harvest35	U35_4478	812	3e-25	99 - 158	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_4478 812 Hv_44K_v2
GAGCTGCCATCTATCTATTTCTTCCTGTCTCTAGATCTCTAATTCTCTAATCTCTCTGCT
CTATCTAGCTCTCCACTTGTTAGATCCCTAGTCTAATTGATGTAGTCGGATAAACCTTCA
TCCGAATTGGAGCATGCTGACATTGTTTGTCGACTCACTGGGCAAGTGTGTGTGTGAGCG
GCCGCTCGCAGGGATCCAACGGAACAGGACTGTAGCTGCCTCTGTATCTTTGACCGTGGA
GTGAAATTATGTGCGGCAGAGCTTGAACCAAATACTCGAGCTTCTCGGCAAATAATCAAC
AAACCGATGCAGTGTATATTCTGAGAGTTGCTTTTGATTAGAAATTTTGTCCAAGTTCCT
GTTGTACTTAGTTATGTTTGGGGCATGTTGGTACTTGAGTTTTGAACAGTTGGCAAATTT
GAACTATGGCTACTATAGGTTATGCCAGCGGAGGCTGAAACGGCAGCGCAGGCCGAAGCG
AGACGTCACGCGGGGCAGGAGCTCCGGTGGAAGAGTTTGCTCGATATTTGGAATGGGTTG
GGAGACTGGAGGAAATCCGGAACTGACCGGTAGATGTGCAATTGCTAGTCGTTGGTTAGT
GATTTGCTAGTCGTTGGTTAGTGATGGTGTGAAGACTGCAACCACACACTGAATGTTTTT
TCTTTTCTTTTTGCGGGGTAACCAGGGGCGGAGCCACGATTTAAACATAGACGGACCAAA
GCGACGACACTTAGATAATGCTATCGCCTTTTCTCCGAATTATAATATGTTTGGTATATT
TCAATTTAAACTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4478 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None