barSeed - Barley Seed Development Database

Probe CUST_40243_PI390587928

Source Contig U35_4479

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40243_PI390587928	Hv_44K_v2	GTGTGAAGACTGCAACCACACACTGAATGTTTTTTCTTTTCTTTTTGCGGGGTAACCAGG	980	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.604	2.508	1.016	0.946	0.620	0.610
Raw	34.381	52.174	18.603	26.908	4.627	5.911

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356806	1167	2e-24	993 - 1052	100	60 / 60	plus	ABC10546
MLOC	MLOC_22770.2	739	2e-24	590 - 649	100	60 / 60	plus	ABC10546
MLOC	MLOC_22770.1	977	2e-24	810 - 869	100	60 / 60	plus	ABC10546
JLOC1	JLOC1_15774.1	1343	8e-25	763 - 822	100	60 / 60	plus
Harvest21	ABC10546	1141	3e-25	981 - 1040	100	60 / 60	plus	ABC10546
Harvest35	U35_4479	1138	3e-25	981 - 1040	100	60 / 60	plus
Harvest35	U35_4478	812	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (1138 bp)

>U35_4479 1138 Hv_44K_v2
CACCTGAAGTGAGAGATGGCAGGGTTCTTCAGCACCTGTGCTGCTTCTGATCACTATTGT
TTGCAGCTCAGATCTGGATCAGCTCAGCATGAACTGACCAGACCAAACAAGTACAGAAGA
AGAAGCATGATCAGGTGCTGCAGCACAGCAAAGGGGAAGGCAAGAAGGGACTACTACGAG
GTGCTTGGAGTAGCAACTCATTCCACGCCTCATGAGATCAAGGAAGCTTACAGGAAACTC
CAGAAGCAACACCATCCTGATATCGCTGGCGACAAGGGCCATGACTACGCGCTGTTGCTG
AACGAGGCCTATGAAGTGTTGATGAGGAGTTCTTCCAGGAAAGCTGATGGATTTGGCAAG
AGCAGAGGCGGCTTTGGGAGCGGTTACACCGGGGACGGATGCAGTTCTTGGAATGGGCCT
ATGAGAAGCCAAGCTCTCTTTGTGGATGAGAACAAATGCATAGGATGTAGGGAGTGTGTC
CACCATGCTGGCGAGACGTTTGCCATGGACGATGTTCTTGGAAGCGCGCGCGTCCAAGTC
CAGTTCGGTGACGCGGACCAGCAGATCCAGGTGGCTGTGGAGTCCTGCCCTGTGAACTGC
ATCCACTGGGTCGGGAGCCAAGAACTCCCGGTGCTGGAGTTCATGACGCGTCCGCAGCCC
AAGGAAGGGCACGGGGTGTTCGGCGGCGGGTGGGAGAGGCCCAAGGACGTGTTCGCGGCG
GCCAGGAACTTTGCCAGGAAACTCGAGAGGCAGGAGCAGCAGGAACGTTCCCAAGGCGCC
AACGGGGGTGGCCGTGAAGATATGGAGGCTGAAACGGCAGCGCAGGCCGAAGCGAGACGT
CACGCGGGGCAGGAGCTCCGGTGGAAGAGTTTGCTCGATATTTGGAATGGGTTGGGAGAC
TGGAGGAAATCCGGAACTGACCGGTAGATGTGCAATTGCTAGTCGTTGGTTAGTGATTTG
CTAGTCGTTGGTTAGTGATGGTGTGAAGACTGCAACCACACACTGAATGTTTTTTCTTTT
CTTTTTGCGGGGTAACCAGGGGCGGAGCCACGATTTAAACATAGACGGACCAAAGCGACG
ACACTTAGATAATGCTATCGCCTTTTCTCCGANATTATAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_4479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g28050.3	201	8e-78	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None