barSeed - Barley Seed Development Database

Probe CUST_40237_PI390587928

Source Contig U35_4486

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40237_PI390587928	Hv_44K_v2	GTGCTCAGATTTCTTGGTTTTCTTTAGCTTGTGTTTGTTTCATTAAAGGATGTCTTGTAG	1542	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.881	2.045	1.093	0.726	0.161	0.134
Raw	86.284	144.269	70.224	75.046	3.967	2.737

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_6520.2	1738	8e-25	1627 - 1686	100	60 / 60	plus
JLOC1	JLOC1_6520.1	2692	8e-25	2581 - 2640	100	60 / 60	plus
Harvest35	U35_4486	1679	3e-25	1543 - 1602	100	60 / 60	plus

Contig Sequence (1679 bp)

>U35_4486 1679 Hv_44K_v2
GTCTAGCGCTACGCTACAGTATGCGGACGTCTGAACTTGAAGGGGGAGCAGAGTAAAGCA
CGGGACCGAACCGAGGAGACCACGCCTCCTCCTCCTCCGTCTCTCCCACGGCAACGATCC
AGCGACGCCCGGCAAGCAACCAGCGGCCGAGGCGGCGGGGGTCTCGGGTCTCTTCGGGGA
AGACCACCACGCCGCGGCGGCGATCCACCGGGGTGGCGGGGCGGAGATGTCGGACGCGCT
GATCAACGGCCTCGCCGGCGCCGGTGGCGGGATCGTCGCCCAGCTCCTCACCTACCCCCT
CCAGACTGTGAACGCGCGGCAGCAGACGGAGCGGGACCCCTCCAAACCGGCGTTCAAGGA
CGGCGCCGTCCGCCAGATGTGCCTGGTGGTGCAAAACGAGGGGTGGGAGCGGCTCTACGG
CGGCCTGGCGCCCTCGCTCGTCGGCACCGCGGCGTCTCAGGGTGTCTACTACTTCTTCTA
CCAAATATTCCGGAGCAGGGCGGAGGCAGCATCCCTTCGGCGGTCCATTAGAGGAATTGG
GGACGGGTCTGTCGGGATGTTCCAATCACTCACTGTCGCTGCACTTTCTGGATGCGTCAA
TGTACTTCTAACGAACCCAATTTGGGTTGTTGTCACACGAATGCAAACTCACAGAAAGGC
AAACAAACAGCAAGGCCCTCAGGATCAGGGTTTGACATCTGCTCTTGATAAGGCCCTACA
ACCTGCCCCAGTGGAAAACGTCCCTCATAAAACTATCAGTGTTATTCAGGATCTTTACAA
GGAAGCTGGAGTGTTTGGCTTCTGGAAAGGGGTTATTCCAGCTCTCATTATGGTCAGCAA
TCCCGCAATTCAGTTCATGCTGTACGAGACTCTTCTTAAGAAGCTGAAGAAGAGACGTGC
CTCTAATTTTAAGGGGGCTCAGGGACTGACTGCTCTTGAAGTTTTTCTTCTCGGAGCTGT
TGCAAAACTGGGTGCAACTCTTGTTACATATCCTCTTCTAGTTGTGAAGGCAAGACTTCA
GTCGAAGCAAATGATCGACGATGACAAGAGGCATCGCTACAAAGGCACGTTTGATGCAAT
CACAAAAATGATGCATTATGAAGGCCTGTCAGGGCTTTATAAAGGAATGGGCACAAAAAT
TGTACAGAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATCAAGGAGGAGCTGGTGAAAGG
TGCTCGATTCTTGGTAACCGGTGACACCAGCCTGGTAAAGAAGTTGCCTTCAAAGCCCTC
AAGATGATCAAGGTCTGTGCAGAAGGGTTAGTTGCTGATTATATCATAAATTGCGAACAG
AGTCGGCAAAAAGAGCTCGCCTCTGAGGTACCAAGTTACAGATGGTAGACATAATGGGGA
TGTACACTTTGAGATTATACGGTGACCACTATGATTCTTGTAGGTACTGGGAAAAATTAT
ACATTTGGATAGGATATTTGAGCCATTCGTGTAATGTAAAATATATTCAGGAATGTTGAA
AGATAAAAAATAAGTTGGTAGTGAGAATTGCAACTGTCTCGTGTGCTCAGATTTCTTGGT
TTTCTTTAGCTTGTGTTTGTTTCATTAAAGGATGTCTTGTAGTATATCTGAAAATCAGCA
ATTACTTCAGCTTATCGATATTGGAAAGTATCTATAACACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15860.1	345	0.0	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi1g67180.1	338	0.0
Arabidopsis v10	AT2G39970.1	331	3e-129	Mitochondrial substrate carrier family protein \| chr2:16684026-16686392 REVERSE LENGTH=331