barSeed - Barley Seed Development Database

Probe CUST_40233_PI390587928

Source Contig U35_4492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40233_PI390587928	Hv_44K_v2	GAAAATGCATGATGGTTGTTTGTATTCTGAGCAGTGAATAAATTTCATGTTCGTCTGGTA	804	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.519	0.733	0.973	1.574	1.052	1.323
Raw	945.557	2097.061	2467.263	6179.277	1468.071	2001.627

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62716.3	2039	2e-24	1865 - 1924	100	60 / 60	plus	ABC12234
MLOC	MLOC_62716.1	1879	2e-24	1701 - 1760	100	60 / 60	plus	ABC12234
MLOC	MLOC_62716.4	743	6e-24	685 - 743	100	59 / 59	plus	ABC12234
JLOC1	JLOC1_41063.1	1725	4e-23	1559 - 1615	100	57 / 57	plus
Harvest21	ABC12234	862	4e-24	805 - 862	100	58 / 58	plus	ABC12234
Harvest35	U35_4492	880	3e-25	805 - 864	100	60 / 60	plus

Contig Sequence (880 bp)

>U35_4492 880 Hv_44K_v2
GGAACCATCCAAATGAAAAGTTACCTTAGTGGGAATCCAGAAATCCGTCTAGCTCTGAAT
GAGGATTTGGGCATTGGAAAGAATAGCTCTTCTACACATGATTACAGAAGTTCTTCTGGA
GGAGGATCCGTCGTTCTTGATGATTGTAACTTCCATGAGTCAGTGCAGCTCGACAGTTTT
GACATTGACAGAACTCTGCATTTAATACCACCTGATGGAGAATTTCCAGTGATGAACTAC
CGGATGACTCAAGAATTTAAGCCACCCTTCCGCGTTACTGCACTAATTGAAGAAGCTGGC
CCATCTAGGGCTGAAGTTCTATTGAAAATACGGGCAGACTTTCCTGCGAATGTCACTGCT
AACACAATCACAGTACAGATGCCAGTACCCTCTTACACTATGAGGGCAAGTTTTGAACTG
GAAGCTGGGGCAGTTGGACAGACAACGGATTTTAAAGAAGGAACTAGGAGACTGGAGTGG
AATCTAAAGAAGATTGTTGGTGGTTCCGAGCATACCCTTCGTGCAAAGCTCACATTTTCT
CAGGAGACACATGGAAACCTCACAAAGGAAGCCGGACCAGTAAACATGAACTTCACTATA
CCTATGTACAATGCTTCAAAGTTACAGGTCAGATATCTTCAGATAGCGAAGAAATCCAAA
ACATACAATCCATACAGGTGGGTCAGATATGTGACACAGGCCAACTCGTATGTAGCCCGG
CTATGAGGACATTGTTTGTACAATTCTTCCAAAGGCCCTTGTGCAACTTTCTTTTAGTGT
TAATTTTTTCTTCTGTAATATGCAGAAAATGCATGATGGTTGTTTGTATTCTGAGCAGTG
AATAAATTTCATGTTCGTCTGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42810.1	452	5e-153	protein\|adaptor complexes medium subunit family domain containing protein, expressed
Brachypodium v1_2	Bradi1g21200.1	452	3e-160
Arabidopsis v10	AT4G24550.2	451	5e-133	Clathrin adaptor complexes medium subunit family protein \| chr4:12675873-12678903 FORWARD LENGTH=451