barSeed - Barley Seed Development Database

Probe CUST_4022_PI390587928

Source Contig U35_49318

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4022_PI390587928	Hv_44K_v2	CATGTGCTAGTACTGATTTTATGTAATGATGTGTATCATTCTTATGGAACACCTTCTGTG	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16581.1	3436	2e-24	85 - 144	100	60 / 60	minus	ABC12946
JLOC1	JLOC1_11425.2	3461	8e-25	3320 - 3379	100	60 / 60	plus
JLOC1	JLOC1_11425.1	3286	8e-25	3145 - 3204	100	60 / 60	plus
Harvest35	U35_49318	477	3e-25	44 - 103	100	60 / 60	minus

Contig Sequence (477 bp)

>U35_49318 477 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAGATGAAATGTTTGACAGGATTATTCACAGAAGGTGTTCCAT
AAGAATGATACACATCATTACATAAAATCAGTACTAGCACATGTCTTAAACAACATAAAA
CCAGACTGGGACCGCTGGAAGGCAATGGATACCAAACTTTGAAGAGTAAATATGTTGCAC
ATACAAGTGCCGACAAATGCTGATGACGACATCAATATATAATCACAAATTTGCTGAAAC
GATTAAAAGTACTACACAACTGCAACTGACAGATGCACCATACAAGACCGACACCGCAGG
GAGAACTGAGCCGCCACATCTAGATATAAACCTCTGGAACATGCAGGGTCTTCTGATGCA
TTTCGTTAGTGTCCCAATGACTTCTGAAATCCTTGTGCAAATACTTCAGTGTAAGCTTCT
TAAGGGAGCGGAGGGATTCAATGCCTTGAGGGACCTTACCAAGCTTCGGCAACGAGA

Homology of Contig U35_49318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None