barSeed - Barley Seed Development Database

Probe CUST_40221_PI390587928

Source Contig U35_21504

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40221_PI390587928	Hv_44K_v2	CCTCAGTCACGTCTAAATAAGCGGGCAGTCCTGTTATACATAATGATTTTTGTCAAAAAA	904	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.853	5.744	1.313	1.130	0.250	0.466
Raw	157.830	259.328	49.527	70.690	2.971	9.723

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62271.1	840	3e-21	3 - 56	100	54 / 54	minus	ABC21053
JLOC1	JLOC1_40735.2	1640	2e-21	1489 - 1542	100	54 / 54	plus
JLOC1	JLOC1_40735.1	1635	2e-21	1484 - 1537	100	54 / 54	plus
Harvest21	ABC21053	975	3e-25	12 - 71	100	60 / 60	minus	ABC21053
Harvest35	U35_21504	975	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (975 bp)

>U35_21504 975 Hv_44K_v2
CTTCTCGCAAGATGATCTGGCAACGGAGGAGACGTTGATACTGGACTGCGGTGAAGAAAT
CTACGTCTGGGTTGGAGTTCACTCAGGTGTCACGTCCAAGGAGCATGCCCTCGACTTCGG
CAAGATGTTCCTTCAGGCAGGCATTGCTCGGGATGGACCACGGTCGATCACCGACACAAC
CGTGTATGCTGTCGCTGAAGGGGATGAACCTTCATTTTTCACCAGCTTCTTCAACTGGGA
TAGCTCAAAACAAGCTGCAGCTATGCTGGGGAACTCATTTGAGAGGAAGCTGGCAATGCT
GAAAGGGCTTTCACCAAAATTGGAGTCACCGGACAGGAGCTTGCGCAAGTCTCCGTCGCG
AAGACAGGGGATGTCGTCAGAGCCGACAACGCCGGAGCAGAAGCAGCAGCAGCAGCCGCC
GGCAGCGAGGAGGACGTTCGGGTCTGCCTCTGCCGGGAGGACCGCCAGGGAGAGACTGCC
GCCATCTTCATCCGCAGCGTCGGCAACACCATCCTGGTCCCTCAAGAGCCGCGCGTCGTC
ATCGCCGTCGACGCCAGCAACGGCGCGACGGCTCTTCCCTTCCTCCTCGCTGCACGCACC
GGGGACGGCAGCCGCGCATCTCCCCTCCCCTGCGGCGGCCATAGGGAGTCCTGCTCGACG
ACGGTGAGCAGAGCTCCCTGGTGCAAACCGGAGGAGGATAAGTCCGTCACAACCGTACCT
GTACCGTAACAATACGCCGGATATTTGCTTGCCCTGGGAGGCCAAACACGAGGTGCTTTT
CCCTGGGTACGTCGCAACGGGGGTGGGCCGTGCACCACGCGATATGACCCAATTCCGGTT
GTAGATGAGTCATGAGTACATTGGACGGAGGGAGAACTAGATTATCAGGGTACCCACTGT
AACACCTCAGTCACGTCTAAATAAGCGGGCAGTCCTGTTATACATAATGATTTTTGTCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_21504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06110.1	850	3e-52	protein\|villin, putative, expressed
Brachypodium v1_2	Bradi2g35467.1	833	5e-61
Arabidopsis v10	None