barSeed - Barley Seed Development Database

Probe CUST_40219_PI390587928

Source Contig U35_21506

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40219_PI390587928	Hv_44K_v2	TTCACAAGATCACTCATGTCCATGACAGAATGAGAATCACTTTTTTGGCTCAAGAAAAAA	843	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.790	10.439	1.275	0.514	0.847	0.754
Raw	99.987	136.463	14.271	6.956	3.086	3.028

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60617.2	4152	2e-24	6 - 65	100	60 / 60	minus	ABC18178
MLOC	MLOC_60617.1	4039	2e-24	36 - 95	100	60 / 60	minus	ABC18178
MLOC	MLOC_60617.4	4012	2e-24	5 - 64	100	60 / 60	minus	ABC18178
MLOC	MLOC_60617.3	3522	2e-24	5 - 64	100	60 / 60	minus	ABC18178
MLOC	MLOC_60617.5	2343	3e-22	1 - 56	100	56 / 56	minus	ABC18178
JLOC1	JLOC1_39543.2	4079	8e-25	3845 - 3904	100	60 / 60	plus
JLOC1	JLOC1_39543.1	4074	8e-25	3840 - 3899	100	60 / 60	plus
Harvest21	ABC18178	913	5e-23	844 - 902	98	59 / 60	plus	ABC18178
Harvest35	U35_21506	946	3e-25	844 - 903	100	60 / 60	plus

Contig Sequence (946 bp)

>U35_21506 946 Hv_44K_v2
CGCGGGCGCACGCCGTCGTGGTGCTGGCCGTCGCGTCGTTCCAGCTCTTCTTCATGCTGC
TCAAGAAGCCCTTCATCAAGAAGCGGGTGCAGCTGGTGGAGATCGTCGCGGTGGCCAGCG
AGGTGTTCGTCTTCGCCGCCTGCCTCGTGCTCATCGACCGGAACAGCGACGACGGCAGGG
GCGAGCTCGAGGAGGTCGAGGAGAGCGGCGGCGTAGGGATCGCCATGCTCGGCGTGTTCT
CGCTGGCGTTCGCGGCGCAGGTGTGCAACGAGTGGAACGCGCTGTACCGGCAGGTGCAGT
ACCTGAGCCCGGACAGGAGCTCCTTCCTGGAGGGCGCCAAGGCGGCTTCAGTCGGGCTGC
TGCTGCTGGTGCTCCCGTCGTCGGCGCTGGGCGACCCGCTGGCGGGCCAGAATGAGCAGG
AGCCGTCGCCGGACAGCAGCGGCGCCACGGGTCAGACGGTGCCGGGCGAGGCGCAGAGGA
GCTCGAACGAGCGGTCGTGGCTTGGGCAGCTGCGGGAGATGGCCAAGGCGAGCTTCAGCA
GGGACGGGGAGGACCCGTCCAGCAGCACCGCGTACAAGGGGAAGAGGAGCCGGAGCTCGT
CGGTGGCATCGCAGTCGGCGGACTCCAAGGCCAAGGGGGAGTGGAGGCCCAAGTCCAAGG
CGCTGTACAAGGATTTGGAGGCCATTTTCTCCAACAGGTAGCAGGCTTGCGGGTCCATGG
ATTGCAAGTGAGAATAAGCAACATGAGGGGAGGGGGGGACACGCTGCATATACTAGTAAT
ATAGGAAATATGCCGTTTAATTTGACACAAAAATCATCACTAGGTGTAATGTTGGTAGCA
TTATTCACAAGATCACTCATGTCCATGACAGAATGAGAATCACTTTTTTGGCTCAAGAAA
AAAAAAACAAGTTTTTTCTCTAGATATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_21506 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None