barSeed - Barley Seed Development Database

Probe CUST_40215_PI390587928

Source Contig U35_21510

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40215_PI390587928	Hv_44K_v2	GACACACATATATTCTTTAGATCTTTATTAGGCCTGTGGAATAATAATCATGTCAAGGGG	994	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.376	2.100	1.136	0.526	0.058	0.041
Raw	1338.825	1753.226	848.346	597.822	26.024	19.372

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370424	2605	2e-24	2521 - 2580	100	60 / 60	plus	ABC14392
MLOC	MLOC_60923.1	755	2e-24	565 - 624	100	60 / 60	plus	ABC14392
JLOC1	JLOC1_39762.1	663	8e-25	580 - 639	100	60 / 60	plus
Harvest21	ABC14392	1096	3e-25	995 - 1054	100	60 / 60	plus	ABC14392
Harvest35	U35_21510	1096	3e-25	995 - 1054	100	60 / 60	plus

Contig Sequence (1096 bp)

>U35_21510 1096 Hv_44K_v2
GCTCCAGTGGGGTACGTTGAGAAGCCGGAGACGAGCCTGGAGACGAAGCCAGCGCCGTAC
ATGGCCGCTTTCTCCTCGCAAGGACCCAACCCCGTCAACCCGGAGATTCTCAAGCCCGAC
ATCACAGCGCCCGGGGTGGGCGTGATCGCCGCGTTTACGCGCGCCATGGCCCCCACGGAG
CTCGCCTTCGACGAACGCCGCGTTGCCTTCACGACCATGTCGGGGACGTCCATGTCGTGC
CCGCACGTCTCCGGCCTCGTGGGGCTCCTCAAGGCGCTCCACCCAGACTGGAGCCCTTCC
GCCATCAAGTCGGCAATGATGACGACGGCGACTGACGTGGACAACAAGGGCGAGTCCATC
CTCAACGCATCCTTGACGCCGGCCGGGCCCTTTGCCTACGGCGCCGGCCACGTGTGGCCA
AGCCGCGCCATGAACCCCGGCCTCGTCTACGACCTCGGCCCCGACCACTACCTCGACTTC
CTTTGCGCGCTCAAGTACAACGCCACAGTTCTGTCCATGTTCAACGGCGAGCCGTACAAG
TGCCCCGAGAAGGCTCCCAAGATCCAGGACCTCAACTACCCGTCCATCACCGTCGTCAAC
CTCACGGCCTCCGGCGCAACGGTGAAGCGAACGGTGAAGAACGTTGGTTTTCCGGGCAAG
TACAAGGCGGTCGTGCGCCAGCCGGCTGGCGTGCACGTGGCGGTGAGCCCTGAAGTGATG
GAGTTTGGAAAGAAGGGGGAGGAGAAGACGTTCGAGGTCAAGTTCGAGATCAAGGACGCC
AAGCTGGCAAAGAACTACGCGTTTGGCACGCTCATGTGGAGCAATGGCGTCCAGTTCGTG
AAGAGCCCCATCGTTGTCAAGACGGCGGCATGAAGGGCAACTGGGTAAAATCATATCGAT
CGGATGTTATAGGTTCGGATTAGCTTAGGAATCAATCAAATCGTGTGTTAGGGTATCCAT
TAGGTTAGGAATTAAGCCGGTGTAGAGAGAAACAGACACACATATATTCTTTAGATCTTT
ATTAGGCCTGTGGAATAATAATCATGTCAAGGGGAATAAAATGGTTATAGTAGTTCTTGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_21510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10520.1	800	2e-121	protein\|OsSub12 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi3g07280.1	781	2e-140
Arabidopsis v10	AT2G04160.1	772	2e-91	\| Symbols: AIR3 \| Subtilisin-like serine endopeptidase family protein \| chr2:1401450-1407694 REVERSE LENGTH=772