- Probe CUST_40210_PI390587928
- Source Contig U35_21515
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40210_PI390587928 | Hv_44K_v2 | TCAGAGACTCCTCCATCTCAGAAGAGGTCTGAGGCATTAGCTTCCTCCCTTAACTATATT | 473 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.110 | 1.040 | 1.313 | 1.302 | 0.620 | 0.588 |
| Raw | 37.162 | 47.648 | 60.901 | 94.105 | 15.787 | 16.272 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55250.5 | 1822 | 7e-23 | 825 - 881 | 100 | 57 / 57 | plus | ABC19619 |
| MLOC | MLOC_55250.6 | 952 | 7e-23 | 482 - 538 | 100 | 57 / 57 | plus | ABC19619 |
| MLOC | MLOC_55250.2 | 718 | 7e-23 | 274 - 330 | 100 | 57 / 57 | plus | ABC19619 |
| MLOC | MLOC_55250.3 | 1453 | 7e-23 | 570 - 626 | 100 | 57 / 57 | plus | ABC19619 |
| MLOC | MLOC_55250.1 | 1228 | 7e-23 | 382 - 438 | 100 | 57 / 57 | plus | ABC19619 |
| MLOC | MLOC_55250.4 | 1369 | 7e-23 | 564 - 620 | 100 | 57 / 57 | plus | ABC19619 |
| JLOC1 | JLOC1_35627.5 | 1885 | 4e-23 | 489 - 545 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_35627.4 | 1890 | 4e-23 | 489 - 545 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_35627.3 | 1832 | 4e-23 | 564 - 620 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_35627.2 | 1969 | 4e-23 | 573 - 629 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_35627.1 | 1832 | 4e-23 | 436 - 492 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_21515 | 538 | 3e-25 | 474 - 533 | 100 | 60 / 60 | plus |
Contig Sequence (538 bp)
>U35_21515 538 Hv_44K_v2 ATCGTTCCGCCGCCGCGACCGCGACCGCGATGGCTTACCGCCGTAAGCCGCAGTCCTCCT TCGAGCACCACCACCACCAACCGCAGCCCGTTAGCCCTCCCTCCCCGCCGCAGGACTCCC TCGCCGCGCAGGCCATGCGCGCCTCCGCCGCCCACCGCGACGCCTCTTCTCTCTCCTCCG CCTACTCCTCCTCGGCTGCCTCCGCGGCCGCCGCCGCTCGCAGGAGCCACGAGCCCTCCG TCTCCACCCCGTCCCCTGACTCTTCCAGCTATGGGTACACGTCCATGAAGAGCTTGAACG AGGCCAAGTATGGATTTTGGGGGACGCTTGCTCGGAAAGCAAAGTCACTTATTGACGAGG ATGGGTCGCCTGGGCAATATGATTCCCTGACAAGACAGCAGCCGCCCAGAGATGGTACAT CACCAGCTATGCATAGACAACACTTACAACAGCCAGCGCCAGAGACATGGAAATCAGAGA CTCCTCCATCTCAGAAGAGGTCTGAGGCATTAGCTTCCTCCCTTAACTATATTGGAGA
Homology of Contig U35_21515 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |