barSeed - Barley Seed Development Database

Probe CUST_40209_PI390587928

Source Contig U35_21516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40209_PI390587928	Hv_44K_v2	TTGTGAGTGAGAGCTGAAGCAAGCTCGATCGCTAGGAAGGAAGGAAGTCATGGAGATAGC	46	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358557	1700	2e-24	54 - 113	100	60 / 60	plus	ABC14081 ABC15712 ABC21253
MLOC	MLOC_70974.1	577	2e-24	254 - 313	100	60 / 60	plus	None
JLOC1	JLOC1_47133.1	601	8e-25	287 - 346	100	60 / 60	plus
Harvest21	ABC17997	606	3e-25	47 - 106	100	60 / 60	plus
Harvest35	U35_21516	606	3e-25	47 - 106	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_21516 606 Hv_44K_v2
TATGAGTAACGCCATCAGGAGTTCATGGCCACACGCACAACACGACTTGTGAGTGAGAGC
TGAAGCAAGCTCGATCGCTAGGAAGGAAGGAAGTCATGGAGATAGCGGGGCCGCTGGCGC
CGGGGGAGAGGCCGCACGCCGTGATGATCCCATACCCGGCGCAGGGCCACGTCACGCCGA
TGCTGAAGCTGGCCAAGCTACTCCACGCCAGGGGCTTCCACGTCACCTTCGTCAACAACG
AGTTCAACCACCGCCGCCTGCTGCGCTCCCAGTCCGCCGACACGCTACGCGGCCTGCCCG
CGTTCCGGTTCGCCGCCATCGCCGACGGCCTTCCGCCGTCGGACCGTGAGGCGACGCAGG
ACATCCCCGCGCTGTGCTACTCTACCATGACCACCTGCCTCCCACGGTTCAAGGAGCTCG
TCCTCAAGCTCAACGAGGAGGCCGAGGCCTCGGGCGGCGCGCTGCCGCCGGTGACCTGCG
TGGTAGCCGATAGCATCATGAGTTTTAGCCTTCGCGCCGGGCGGGAGCTCGGCCTCCGCT
GCGCCACGCTCTGGACCGGCAGCGCGTGCGGTTTCATGAGCTACAACCATTACAAGGATC
TAGTCG

Homology of Contig U35_21516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31200.1	498	8e-79	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi5g06377.1	491	5e-88
Arabidopsis v10	AT1G22370.2	479	5e-57	\| Symbols: AtUGT85A5, UGT85A5 \| UDP-glucosyl transferase 85A5 \| chr1:7898116-7899879 REVERSE LENGTH=479