barSeed - Barley Seed Development Database

Probe CUST_40206_PI390587928

Source Contig U35_21519

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40206_PI390587928	Hv_44K_v2	AACCAATAAGCCGATCACAGCACGGTTTTGAATTTGCATCAGACGGTGTTCAAAATCAAA	638	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.713	5.963	1.101	0.455	0.942	0.839
Raw	50.287	73.138	11.124	4.961	3.492	3.410

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54829.2	5198	7e-23	3327 - 3383	100	57 / 57	minus	ABC16305
JLOC1	JLOC1_35314.1	1879	4e-23	1774 - 1830	100	57 / 57	plus
Harvest21	ABC16305	699	3e-25	626 - 685	100	60 / 60	plus	ABC16305
Harvest35	U35_21519	712	3e-25	639 - 698	100	60 / 60	plus

Contig Sequence (712 bp)

>U35_21519 712 Hv_44K_v2
GCAACTCCCAAGGGCGTTCTGAAGCTTATGAAAGTGGATGGCCTGACCATCTATCATGTA
AAGAGCCATTTGCAGAAGTACCGACATGCAAAGTTTATTCCAGAGATCAAAGAAGAAAAG
AAGGCTTCCTTGGACGTTAAGAAGGTACAACCGGGTAGCAGTGGAAGTGATCCGTTCAAA
AACAAGAACTTGGCAGAAGCTCTACGGATGCAATTGGAGGTTCAGAAACAGCTCCATGAA
CAGCTAGAGGTGCAAAGGCAATTGCAGCTACGCATAGAAGAACACGCGAAATACTTGCAG
AGGATACTAGAGGAGCAGCAGAAGGCCATCGCCAGCAGTGGCAGCTCGCTCTCACTGAAA
ACCCCGACAGAGCCGTCCGAGTCGACGTCGAAAGACGGAGCTGAACCCGAAGAGGCCACC
ACTTCTTCACCTCAGCCGTCCAAAAACAGCGAGACAGAGTCATAACGGCCGTCACATTGT
CCGGTTGCTTCACCACTTCCTCGGTGGCAGAGCTGTGGTGGCCATGGTGATATATACACG
AACACGGTAGTTTGAATGGACTTGAGGATTTAGCCAGTGGTCAAGCAGAGGGTGTATGTA
TGTGTATATAACTTTCACATGGGAATAGAAAATGGGGGAACCAATAAGCCGATCACAGCA
CGGTTTTGAATTTGCATCAGACGGTGTTCAAAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21519 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g34470.4	474	2e-55
Arabidopsis v10	None