barSeed - Barley Seed Development Database

Probe CUST_40204_PI390587928

Source Contig U35_19201

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40204_PI390587928	Hv_44K_v2	ATGTAAAACTTGGTGCCTCAAAAGCTTTTTTAGGGCAGGAGAGAAGGGTTTTGAGCACCG	478	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375177	2035	2e-24	1887 - 1946	100	60 / 60	plus	ABC37864
MLOC	MLOC_19267.3	2262	2e-24	39 - 98	100	60 / 60	minus	ABC37864
MLOC	MLOC_19267.1	2215	2e-24	43 - 102	100	60 / 60	minus	ABC37864
MLOC	MLOC_19267.2	2211	2e-24	43 - 102	100	60 / 60	minus	ABC37864
MLOC	MLOC_19267.4	1150	9e-22	1 - 55	100	55 / 55	minus	ABC37864
JLOC1	JLOC1_13364.6	1962	8e-25	1825 - 1884	100	60 / 60	plus
JLOC1	JLOC1_13364.5	1992	8e-25	1855 - 1914	100	60 / 60	plus
JLOC1	JLOC1_13364.4	1914	8e-25	1777 - 1836	100	60 / 60	plus
JLOC1	JLOC1_13364.3	1758	8e-25	1621 - 1680	100	60 / 60	plus
JLOC1	JLOC1_13364.2	1792	8e-25	1655 - 1714	100	60 / 60	plus
JLOC1	JLOC1_13364.1	1722	8e-25	1585 - 1644	100	60 / 60	plus
Harvest21	ABC36531	572	3e-25	479 - 538	100	60 / 60	plus
Harvest35	U35_19201	933	3e-25	479 - 538	100	60 / 60	plus

Contig Sequence (933 bp)

>U35_19201 933 Hv_44K_v2
GCTTATTTCTTGCCCGGTAAGGAGGTGCGTGACGGGGAGGAAGGTGCTCTCGGAAGTGAT
TTTCCTAGAAACATGACCGCTTCTACCATAACGACGACAAAATCCATGACATTAAGGAGC
ACAATAAAGGTGCATGAAGAAGAGACCCTGAATACCGATGGCCTCTCTCGGAATGGTTTC
CACAGTGGCAAAGAGCCTAATAAGAGAGCAGGAAAGACCAAAAGGTGGCTTTGCTGCTTA
ACGCCTCGCACCACAGGATGATAAGAGCCCATCGTTGGAGCTCGCATAGTTAACGCTTGA
TTTTTGGTTGTACATCAGAAAATAGACGAGATACACAAGATGGGAACATGGGAATCAAAT
GGCAATTCCGGAGGCAGCTTGTGAGGTAGTTACAAAGATTAGATCATGTCTTTGGTAAAA
TGTATAGAAGTTGTGTTGTTGTAACATCATGTAAAACATTCTAGAGCATCTCCAACAGAT
GTAAAACTTGGTGCCTCAAAAGCTTTTTTAGGGCAGGAGAGAAGGGTTTTGAGCACCGCA
GCGGCCGCTGGCAAACCAGAAAGCTTTAGCGGTGAATTCCTAGTGCCTTCATACAGAGGT
TCATCCTTCCTTGACCCAAAGGGACGGGGTGGATCTACTGGCTATGACAACGCTGTTGCA
TTGCCTGCTGGAGGGAGAGGAGACGAGGAGGAGCTTCAGAAGGAGAACGTAAAGAATACT
TCATCTTCTATAGGAAAGACCACCCTGAGTGTTACCCAGAGCAAGCCAGAGACCGGTGAG
GTCATTGGAGTATTTGAGAGCGTCCAGCCATCTGATACTGATCTCGGTGCAAAGGTCCCC
AAGGATGTGAAAATCCAGGGTATCTGGTATGCCCAACTTGAATGATGGAGAGATTCCAGA
ATTTGTGTATCATTTCTTGGTCTGAATTTGTTT

Homology of Contig U35_19201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g31690.1	334	2e-64	protein\|oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g56580.1	331	3e-64
Arabidopsis v10	AT3G50820.1	331	3e-64	\| Symbols: PSBO2, PSBO-2, OEC33 \| photosystem II subunit O-2 \| chr3:18891008-18892311 REVERSE LENGTH=331