barSeed - Barley Seed Development Database

Probe CUST_40201_PI390587928

Source Contig U35_19204

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40201_PI390587928	Hv_44K_v2	CGCATTTACAGCAACCGAAACATCAATACATCAAGTATAGAAGTATTGATCATCTTTCAG	1048	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375395	2478	2e-24	1309 - 1368	100	60 / 60	plus	ABC10658
MLOC	MLOC_13069.1	2286	2e-24	816 - 875	100	60 / 60	minus	ABC10658
MLOC	MLOC_13069.2	2283	2e-24	813 - 872	100	60 / 60	minus	ABC10658
JLOC1	JLOC1_8811.3	1869	8e-25	601 - 660	100	60 / 60	plus
JLOC1	JLOC1_8811.2	1866	8e-25	601 - 660	100	60 / 60	plus
JLOC1	JLOC1_8811.1	1856	8e-25	591 - 650	100	60 / 60	plus
Harvest21	ABC11233	1179	3e-25	1049 - 1108	100	60 / 60	plus
Harvest35	U35_19204	1179	3e-25	1049 - 1108	100	60 / 60	plus

Contig Sequence (1179 bp)

>U35_19204 1179 Hv_44K_v2
GGTGGACACTACTATGCCTTCATCCGCCCTACCCTTTCTAATCAATGGTACAAATTCGAC
GATGAACGAGTGACAAAAGAAGACATGAAACGAGCGTTGGAGGAGCAGTACGGTGGCGAG
GAAGAGACTAGGCTAAGAAAGGAAGACGAAGACAAGGAGAACAAGAAAAAAGAGAAAGCC
GAGGCTCACATGTTCACCACATTCAAGGTGGCCAGAGATCATGATTTGGCAGCACAGATT
GGACGAGACATGTTTTTTGATCTCGTGGATTATGAAAAAATTCATCCTATCCGTGTACTT
AAAGACATGCCATTCAACCAGGTTAAGGAGGAGTTCTCGAAAGAACTTGGTATCCCCGTC
CACTCCCAGAGATTTTGGTGGTGGTCTAAGCGTCAGAACAACACCTACAGGCCCACTCGT
CCATTAACTCAACAGGAGGAATCATATACCGTTGGACAGCTTAAAGATCAAGCAGTTCGG
GTGCACGGTTCTGAGTTGAGGTTGTACTTGGAGGTTGTGCAGGAGAATCATTTGACTCTT
GCTTCGAAGACAAAGGATGATATTTTACTTTTCTTCAAGCTCTATGACCCTGAAAAAGAA
GAACTAAGATATGTTGGAAGTCTTTTCTTGAAAGCCTCATATAAGGCATCTGATATAGTG
CCAAAATTGAATGAGATAGCAGGATTTCAGCCTGATGAAGATATTGAGTTGTATGAGGAA
ATAAAATTTGAGCCAAATATTATGTGCGAACAAATTGACTATGATGTTTCCTTCAGTTTG
AACCAGCTTGTAGATGGAGACATATTGTGCTACCAAAAACGTTGTTCTCTGGATATAACG
GACCAACACCGACATCCAAATGTATCTTCTTTCTTTGAATATGTCCATAATAGACAGGTT
GTGCATTTCAGATTGCTTGATAAGCCAAAACAAGACGATTTCTCCCTAGAACTATCAAAA
CGTTCCACATACGATGATGTTGTTGAGAAAGTTGCACAACATCTTGGTATGGATGATCCT
TCAAAACTCCGCCTTACACAGCACATCCCGCATTTACAGCAACCGAAACATCAATACATC
AAGTATAGAAGTATTGATCATCTTTCAGAAATGTTACTTTTACATAACCCCAATCAGATG
TCTGACATTNTATATTATGAGATACTGGACATTCCTTTG

Homology of Contig U35_19204 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56490.1	1111	3e-165	protein\|ubiquitin carboxyl-terminal hydrolase, putative, expressed
Brachypodium v1_2	Bradi2g51255.3	1085	0.0
Arabidopsis v10	AT3G11910.1	1115	8e-147	\| Symbols: UBP13 \| ubiquitin-specific protease 13 \| chr3:3761758-3770290 REVERSE LENGTH=1115