barSeed - Barley Seed Development Database

Probe CUST_40200_PI390587928

Source Contig U35_19205

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40200_PI390587928	Hv_44K_v2	TTGGAAGAGACAGACGTATCTGAACACCTTAAGACTAGGCTAAGAAAGGAAGACGAAGAC	598	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.350	1.176	1.054	0.753	0.475	0.422
Raw	1564.750	2006.615	1650.560	1671.448	414.642	400.453

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375395	2478	2e-24	354 - 413	100	60 / 60	plus	ABC10658
MLOC	MLOC_4049.1	704	2e-24	343 - 402	100	60 / 60	plus	None
JLOC1	JLOC1_2459.1	691	8e-25	197 - 256	100	60 / 60	plus
Harvest21	ABC51784	613	3e-25	399 - 458	100	60 / 60	plus
Harvest35	U35_19205	996	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (996 bp)

>U35_19205 996 Hv_44K_v2
CTATGATCTCGCACTTGATGTCAAGGGCTGCTCAGATGTTTATGCATCTTTTGATAAGTA
TGTAGCTGTCGAGATGTTGGATGGTGATAATAAGTATCAATCTGAAAAATACGGCCTGCA
GGATGCCAAGAAAGGGATGCTTTTTATTGATTTCCCTCCAGTTCTGCAACTTCAACTAAA
GCGGTTTGAATATGATCATGCGCGAGATATAATGGTTAAGATAAACGACCGTTATGAGTT
CCCACTTCAGTTGGATCTTGACAGAGATGATGGGAAATATCTCTCTCCAGAAGCTGATAG
GAGTGTGCGCAACCTCTATACTCTTCACAGTGTGCTAGTTCACAGTGGTGGAGTTAGTGG
TGGACACTACTATGCCTTCATCCGCCCTACCCTTTCTAATCAATGGTACAAATTCGACGA
TGAACGAGTGACAAAAGAAGACATGAAACGAGCGTTGGAGGAGCAGTACGGTGGCGAGGA
AGAGCTCCCCCATACTAATCCTGGACTGAATACGAACCCACTTAAATTTACCAAGTATTC
AAATGCTTACATGCTTGTGTACATACGTGAAAGTGACAAAGAGAAAATTGTATGTGATTT
GGAAGAGACAGACGTATCTGAACACCTTAAGACTAGGCTAAGAAAGGAAGACGAAGACAA
GGAGAACAAGAAAAAAGAGAAAGCCGAGGCTCACATGTTCACCACATTCAAGGTGGCCAG
AGATCATGATTTGGCAGCACAGATTGGACGAGACATGTTTTTTGATCTCGTGGATTATGA
AAAAATTCATCCTATCCGTGTACTTAAAGACATGCCATTCAACCAGGTTAAGGAGGAGTT
CTCGAAAGAACTTGGTATCCCCGTCCACTCCCAGAGATTTTGGTGGTGGTCTAAGCGTCA
GAACAACACCTACAGGCCCACTCGTCCATTAACTNCACAGGAGGAATCATATACCGTTGG
ACAGCTTAAAGATCAAGCAGTTCGGGTGCACGGTTC

Homology of Contig U35_19205 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06950.1	999	1e-158	protein\|ubiquitin carboxyl-terminal hydrolase, putative, expressed
Brachypodium v1_2	Bradi2g51255.3	1085	2e-170
Arabidopsis v10	AT5G06600.1	1116	6e-153	\| Symbols: UBP12 \| ubiquitin-specific protease 12 \| chr5:2019545-2027834 REVERSE LENGTH=1116