barSeed - Barley Seed Development Database

Probe CUST_40191_PI390587928

Source Contig U35_37616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40191_PI390587928	Hv_44K_v2	GAAGACTTACATGCAACATACGCTACACAAAGCAGCAAATCAATCAATGTGGAATATAAT	645	GeneList: blue MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.229	1.177	1.069	0.877	0.427	0.401
Raw	90.117	134.841	108.116	140.914	23.700	24.094

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363462	2443	2e-24	1381 - 1440	100	60 / 60	plus	ABC21576
MLOC	AK366396	2114	2e-24	1292 - 1351	100	60 / 60	plus	ABC21576
MLOC	MLOC_70470.4	931	2e-24	682 - 741	100	60 / 60	plus	None
MLOC	MLOC_70470.3	1541	2e-24	733 - 792	100	60 / 60	plus	ABC21576
MLOC	MLOC_70470.2	3165	2e-24	1703 - 1762	100	60 / 60	plus	ABC21576
JLOC1	JLOC1_46765.3	1739	8e-25	580 - 639	100	60 / 60	plus
JLOC1	JLOC1_46765.2	1768	8e-25	609 - 668	100	60 / 60	plus
JLOC1	JLOC1_46765.1	1895	8e-25	739 - 798	100	60 / 60	plus
Harvest35	U35_37616	760	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_37616 760 Hv_44K_v2
ATCAACTCCTGCTGGTACTTGCCGCTATGACAGTTCGTTAGGACTTCTGACAAAGAAGTC
ATCAATTTGCTGAAGCAAGCTGAGGATGGCATTCTAGATTTGAATAATGCTGCAGAAACA
CTAGAGGTTCAAAAGCGACGCATATATGACATCACAAATGTTCTCGAAGGAATTGGGCTT
ATAGAAAAGACACTTAAAAACAGAATTCGTTGGAAGGGCTTGGATGATTCAGGAGTGGAA
TTAGATAATGGCCTTTCAGGTTTGCAGACAGAAGTTGAAAATCTTAATTTGCAGGAGCAA
GCCTTAGATGAGCGTATAAGTGATATGCGCGAAAAGCTAAGGGGGTTAACGGAAGATGAG
AACAGTCAAAGATGGCTCTATGTGACGGAAGATGATATCAAGGGATTACCCTGCTTTCAG
AATGAAACTCTAATTGCAATAAAAGCTCCTCATGGTACCACACTTGAAGTACCAGATCCT
GATGAGGCTGGTGATTATCTCCAGAGGAGATACAGAATCGTATTAAGAAGTACCCTGGGC
CCAATAGATGTTTACTTAGTTAGTCAATTTGACGATGGATTTGAGAATTTGGGTGGTGCT
GCAACACCTCCAAGGCATACAAATGTCCCAGAACACGGACCTTGTGAAGACTTACATGCA
ACATACGCTACACAAAGCAGCAAATCAATCAATGTGGAATATAATATNCAGCACAGGCAG
AATACTCCACAAGATCCTACTTCAAATGATTATGGAGGGA

Homology of Contig U35_37616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33430.2	417	5e-134	protein\|E2F family transcription factor protein, putative, expressed
Brachypodium v1_2	Bradi3g45130.1	467	1e-146
Arabidopsis v10	AT5G22220.2	469	9e-84	\| Symbols: E2F1, E2FB, ATE2FB \| E2F transcription factor 1 \| chr5:7360749-7364120 FORWARD LENGTH=469