- Probe CUST_40188_PI390587928
- Source Contig U35_13660
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40188_PI390587928 | Hv_44K_v2 | TTGTTGGGATGTACTGGGTCAAGTTTGGAATGGAAATTGCAGTACTAGTTTTCTCCCAGG | 452 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.576 | 0.783 | 0.968 | 1.108 | 0.955 | 1.096 |
| Raw | 36022.600 | 79472.100 | 83608.400 | 142181.333 | 44861.367 | 56938.133 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362933 | 559 | 2e-24 | 500 - 559 | 100 | 60 / 60 | plus | ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30671 ABC32179 ABC43349 |
| MLOC | MLOC_43869.1 | 666 | 2e-24 | 460 - 519 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_28379.1 | 510 | 8e-25 | 304 - 363 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC31826 | 247 | 3e-25 | 18 - 77 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00498 | 559 | 3e-25 | 483 - 542 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00108 | 531 | 3e-25 | 454 - 513 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43336 | 551 | 1e-23 | 18 - 77 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_13706 | 565 | 3e-25 | 489 - 548 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13660 | 532 | 3e-25 | 453 - 512 | 100 | 60 / 60 | plus |
Contig Sequence (532 bp)
>U35_13660 532 Hv_44K_v2 CACCCACCACCGCCGATCCAATCCACTCCACCGAGCGAGAAGGAGAGGAAGATGTCGGGC CGCGGCAAGGGAGGCAAGGGGCTGGGCAAGGGCGGCGCCGGGCATCACCAAGCCGGCGAT CCGGCGCCTGGCGCGTCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG ACGCACCCTCTACGGCTTCGGAGGCTAGGCCTTCCCTGCCCCGCTCGCGACGTCCGCCGT CCGCTAGGGTAGTCGTGTCCAGTCTAGGGTTCGTCGTTCCTCGTGTAGTGTCTTGCTGGT GTTTGCTCGCGTCTTGTGAGCTGATGTTGCTGTTGTTGGGATGTACTGGGTCAAGTTTGG AATGGAAATTGCAGTACTAGTTTTCTCCCAGGAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_13660 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |