barSeed - Barley Seed Development Database

Probe CUST_40187_PI390587928

Source Contig U35_13661

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40187_PI390587928	Hv_44K_v2	TTGTTTGGATGTACTGTACTACTACTGCTAGCATGCAATGGAGAGCTCTGCATTTACCCC	501	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11495.1	960	2e-24	226 - 285	100	60 / 60	plus	ABC00140 ABC00175 ABC00488 ABC31787
MLOC	MLOC_11495.2	1636	2e-24	226 - 285	100	60 / 60	plus	ABC00140 ABC00175 ABC00488 ABC31787
JLOC1	JLOC1_7618.1	538	8e-25	227 - 286	100	60 / 60	plus
Harvest21	ABC00175	579	3e-25	497 - 556	100	60 / 60	plus	ABC00175
Harvest35	U35_13661	585	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_13661 585 Hv_44K_v2
CCACCAGCAAGACACAAACACAGAGGCCAATCCAAGCTCGCCGGAGAGAAGCCAAGCGTC
GAGGATGTCGGGCCGTGGCAAGGGAGGGAAGGGGCTGGGCAAGGGCGGCGCCAAGCGCCA
CCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGCCTGGC
TCGCCGTGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACCCGCGGCGTGCT
CAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCG
CAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTA
CGGCTTCGGCAGCTAGGCCCCCCTGCTCCGTCCAGTCGAACCCACTTCCCGCCGCCAGAT
TCGTAGCTAGCCATGCTCGTTGTTCATTGTTCATCGTCTTCGGCGTAATGTAATGGAATG
GCTGCATCTCGCTGCTGTCTGTTGTTTGGATGTACTGTACTACTACTGCTAGCATGCAAT
GGAGAGCTCTGCATTTACCCCAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None