barSeed - Barley Seed Development Database

Probe CUST_40184_PI390587928

Source Contig U35_13666

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40184_PI390587928	Hv_44K_v2	GGTTCAGTAGGCTGTGTAATACCATGTTCTGTTCAATGCAATCAGTTCGGTTCTGAATCC	470	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377086	529	2e-24	465 - 524	100	60 / 60	plus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30671 ABC32179 ABC43349
MLOC	MLOC_17294.1	341	2e-24	112 - 171	100	60 / 60	minus	ABC00009 ABC00250
JLOC1	JLOC1_11939.1	398	8e-25	169 - 228	100	60 / 60	minus
Harvest21	ABC00250	536	3e-25	454 - 513	100	60 / 60	plus	ABC00250
Harvest35	U35_13666	550	3e-25	471 - 530	100	60 / 60	plus
Harvest35	U35_47230	736	2e-21	18 - 70	100	53 / 53	minus

Contig Sequence (550 bp)

>U35_13666 550 Hv_44K_v2
GGGGATCACAAGCTTCAACATCCGCGCCACTCCCTTCTTCTCCCAAATCCAGCGACGATG
TCAGGGCGCGGCAAGGGCGGCAAGGGGCTGGGAAAGGGCGGCGCCAAGCGCCATCGGAAG
GTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTTGCCAGGAGG
GGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATC
TTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCTCGCCGCAAGACC
GTCACCGCCATGGACGTTGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTC
GGAGGCTAGATCCGTTGCGTAGTGGAGCAACTTCCTCGTTTGCTCTCTGTGATCTGTGCT
GTGGTGGATGAGATTTACTGATTTTGTGTGCGTCGTTGTGTTCTGCCTTGGGTTCAGTAG
GCTGTGTAATACCATGTTCTGTTCAATGCAATCAGTTCGGTTCTGAATCCAAAAAAAAAA
AAAAAAAAAA

Homology of Contig U35_13666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g19360.1	104	5e-51
Arabidopsis v10	AT5G59970.1	103	6e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103