barSeed - Barley Seed Development Database

Probe CUST_40181_PI390587928

Source Contig U35_13669

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40181_PI390587928	Hv_44K_v2	TGTTTCGATGTGGTACCGCTAGCATGGAATGGAAATCTCAGCGCTTTATCCCTGAAAAAA	505	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63957.1	1409	3e-22	1153 - 1208	100	56 / 56	minus	ABC00140 ABC00175 ABC00488
JLOC1	JLOC1_41946.1	448	1e-22	192 - 247	100	56 / 56	minus
Harvest21	ABC00488	564	3e-25	492 - 551	100	60 / 60	plus	ABC00488
Harvest35	U35_13669	578	3e-25	506 - 565	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_13669 578 Hv_44K_v2
GGGGATCTCACCGCACCGCCGCAACAACCACACACCCACAGAACCCAAGCTCGCCGGAGG
GAGAAGCCGTCAACCATGTCTGGCCGCGGCAAGGGAGGTAAGGGGCTGGGCAAGGGTGGC
GCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC
CGTCGTCTGGCTCGCCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACC
CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG
CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGGCAGGGG
CGAACCCTCTACGGATTCGGCGGCTAGTCCGCGCCGCTCCGGTCGGATCCACCTCGCGGC
CGTCGGATTCGTAGCTAGCCATGGTTGTTGTTCAGTGTTCATTGTCTTGAGTGTAACGGA
ATGGCCGCATCTCGCTGCTGTGTGTTGTTTCGATGTGGTACCGCTAGCATGGAATGGAAA
TCTCAGCGCTTTATCCCTGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g19360.1	104	7e-51
Arabidopsis v10	AT5G59970.1	103	8e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103