barSeed - Barley Seed Development Database

Probe CUST_4017_PI390587928

Source Contig U35_25365

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4017_PI390587928	Hv_44K_v2	TGTTGATGACAATGATGGCGGGTCACCTCTTATTGAGAGAGTTGAGGTGTCAGATGCTAT	347	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376759	4417	2e-24	347 - 406	100	60 / 60	plus	ABC34490
MLOC	MLOC_58085.1	3119	2e-24	2742 - 2801	100	60 / 60	minus	None
MLOC	MLOC_58085.2	3266	2e-24	2688 - 2747	100	60 / 60	minus	None
JLOC1	JLOC1_37707.1	3395	8e-25	326 - 385	100	60 / 60	plus
Harvest35	U35_25365	479	3e-25	348 - 407	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_25365 479 Hv_44K_v2
GTGCTGTAAAAATAACCCCTCCATTAAACCCGTCCCCTCCTCCTCCTCCTCTGTATCCAC
CACCCCCCACCTGGATTCCGCCTCCTCCCCCTCCCCCAACCACCGCCGCCGCCGCCCGGC
TCTCGAATCCGAGGCCGTCCGTCGCCGCTCGCGGCGCCCGCAATGCCGCGGGGGATCCCG
AAGCGGAGGCGCCAGCCGTCCCCTGTCGCCGCCGCGGGGGAGCGGAAGCTTCTTCCGGGC
GACCACGTCGAGGTCTTCAGTTTTGATCGAGGGCTATGCGGATCATGGCACCAGGCTGTT
GTAATTGAAACTTTGGACAACTTCCGCTCTGTAAGATATGTCGATTTTGTTGATGACAAT
GATGGCGGGTCACCTCTTATTGAGAGAGTTGAGGTGTCAGATGCTATCGATGGCAAGTCA
AGTGCGGCTCAGGGATCCACTCGTGGAAAAATAAGACCCGTGCATCCACATCAACCGCT

Homology of Contig U35_25365 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None