- Probe CUST_40171_PI390587928
- Source Contig U35_37622
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40171_PI390587928 | Hv_44K_v2 | TTCCATGTTGTTTCAGTTGATGTGCTCCTGTAATTGATGGCAGGCTAATGAGTTAGTCAG | 104 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.071 | 0.103 | 1.822 | 2.786 | 1.152 | 1.127 |
| Raw | 17.331 | 40.409 | 649.850 | 1502.945 | 221.723 | 233.105 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_37622 | 191 | 3e-25 | 105 - 164 | 100 | 60 / 60 | plus |
Contig Sequence (191 bp)
>U35_37622 191 Hv_44K_v2 GACACAAGCATGTGCGGCTGCCCTGTTGATGATGATGGCATTCTGATTCTGAGAAACTTC CAAGTTTCTTGAGGGAAAAACTATTTTGTCCTTCCTCTCCAATCTTCCATGTTGTTTCAG TTGATGTGCTCCTGTAATTGATGGCAGGCTAATGAGTTAGTCAGTATTATTATTAAAAAA AAAAAAAAAAA
Homology of Contig U35_37622 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |