- Probe CUST_40160_PI390587928
- Source Contig U35_49601
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_40160_PI390587928 | Hv_44K_v2 | GAACCTTGTTATGGAAGATATTATCTATTTTGGAATGGTACTGATATGAATGGCCTGTTG | 312 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_66332.1 | 1026 | 2e-24 | 838 - 897 | 100 | 60 / 60 | plus | ABC01489 ABC37497 |
JLOC1 | JLOC1_43692.1 | 1232 | 8e-25 | 949 - 1008 | 100 | 60 / 60 | plus | |
Harvest21 | ABC51418 | 376 | 3e-25 | 313 - 372 | 100 | 60 / 60 | plus | |
Harvest21 | ABC01489 | 1051 | 3e-25 | 836 - 895 | 100 | 60 / 60 | plus | ABC01489 |
Harvest35 | U35_49601 | 376 | 3e-25 | 313 - 372 | 100 | 60 / 60 | plus | |
Harvest35 | U35_264 | 1055 | 3e-25 | 842 - 901 | 100 | 60 / 60 | plus |
Contig Sequence (376 bp)
>U35_49601 376 Hv_44K_v2 GCCAGGTCCTCCTTTCTGTGCGGTGCAAGCCCAACAATGCCATCCATGCAACTGAGGCTC TTCGTCGTGCCAAGTTCAAGTTCCCTGGTCGCCAAAAGATCATTGAGAGCAGGAAGTGGG GTTTCACCAAGTTCAACCGCAATGACTACCTCAAGTTCAAGAGTGAGGGCAGGGTCTTGC CTGATGGAGTCAATGCTAAGCTGCCGCATAATCTAGCAGAAGACTATCAGTTCTATCAAT CCTTATTTTACCGTCTGCAACTTAGATTCCAAGCGCCTGTGGTGCTATGTTATTTTGTCT GAATGTTGTGTCGAACCTTGTTATGGAAGATATTATCTATTTTGGAATGGTACTGATATG AATGGCCTGTTGAATC
Homology of Contig U35_49601 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |