barSeed - Barley Seed Development Database

Probe CUST_40148_PI390587928

Source Contig U35_13679

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40148_PI390587928	Hv_44K_v2	TACTTTTTCATTGGACGGTTGGGCCTTTGTCTTAGCACGTGTTCTCTTTAACGTCCATTG	761	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.814	2.051	1.370	0.753	0.336	0.435
Raw	1648.000	1811.313	1079.353	944.126	147.542	210.497

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10244.1	994	8e-25	870 - 929	100	60 / 60	plus
Harvest35	U35_13679	855	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (855 bp)

>U35_13679 855 Hv_44K_v2
GGGGGCAGACATCCCCGAGCAGAAGCCGCCGCCGACGACGCCGCTCCTCGCGACGCCGCT
ACTTCTCCTCGGGGTGCAACCATGGTGGCCTCCACGAAGAAGACGAAGAAGTCCGGGGAC
AACATCAACAACAAGCTGCAGCTTGTCATGAAGAGTGGCAAGTACACGCTCGGCTACAAG
ACCGTCCTCAGGACCCTCAGGAACTCCAAGGCAAAGCTAGTGATCCTTGCTAATAACTGC
CCTCCACTTCGCAAGTCCGAGATTGAGTACTATGCTATGTTGGCGAAGGTCACTGTCCAC
CACTACCATGGAAACAATGTTGATTTGGGAACTGCCTGTGGTAAATACTTCCGAGTCTGC
TGCTTGAGCATCATTGACCCTGGTGACTCCGACATCATCAACGCAACACCAGCTGGCCAG
TAAACCTGTGTGCCATTTTCAGTATCTTGTCTGATGTGTCATCTGGGGTGTTCTAGAGTG
TAGTTCTTGCTGGACTTGATTTGGTCTTGTGTACATCATTTATCAGTCAATCAAGTTTCA
TGGGACTATCGGTTTGGATCAAAAGTTCTTAAAAAAACCTGGCTTAATTACTCTTTGTTG
CACTGCTGTAAGCAAGCATGGTGTTGCTGTGATCAGTAGATTTGGCTTGAAATGCTCTGA
TTCTTATGAAAAGAGTAACCTTGGCCCGAGACTCGTAATGACATCATGAAATTAGTTGTC
GATGCAAGGTTGGGCCTTTAGCTTAGATGCGATCTGTAGTTTACTTTTTCATTGGACGGT
TGGGCCTTTGTCTTAGCACGTGTTCTCTTTAACGTCCATTGTTGGTTTAGTTTGCGTTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_13679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41110.2	113	1e-67	protein\|ribosomal protein L7Ae, putative, expressed
Brachypodium v1_2	Bradi2g10400.1	114	5e-74
Arabidopsis v10	AT1G77940.1	112	2e-55	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr1:29304116-29305288 REVERSE LENGTH=112