barSeed - Barley Seed Development Database

Probe CUST_40137_PI390587928

Source Contig U35_25659

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40137_PI390587928	Hv_44K_v2	GCGTCGCGTCCATGCAACTATGTAGTCACATCTTTTGTGCTGTGTTGTGCTGGTAAAAAA	573	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.799	2.981	0.498	0.791	0.536	1.192
Raw	783.799	461.702	73.135	189.106	43.512	106.968

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370106	1969	2e-24	1896 - 1955	100	60 / 60	plus	ABC39614
MLOC	MLOC_16499.2	1278	2e-24	11 - 70	100	60 / 60	minus	ABC39614
MLOC	MLOC_16499.1	2125	2e-24	17 - 76	100	60 / 60	minus	ABC39614
JLOC1	JLOC1_11361.1	2857	8e-25	2607 - 2666	100	60 / 60	plus
Harvest21	ABC39614	480	3e-25	34 - 93	100	60 / 60	minus	ABC39614
Harvest35	U35_25659	663	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_25659 663 Hv_44K_v2
GGCAGACGTACCTCCGGCGGGCCCATCCTCATCTACCCCATGAACAAGCACAAGTGGGAC
CCCAGGAGCTCGGTGGTGACGCCCGACGAGGAGGTGTTCTACCTGGTGGCGTTCCTGCGG
TCGGCGCTGCCGGGCGCGCCGGAGAGCCTCGAGGCGCTGGCGCGGCAGAACCGGCAGATC
CTCGACTTCTGCGACGACGCCGGGATCGGGGCCAAGCAGTACCTGCCCAACCACAAGTCG
CAGCCCGACTGGGCGGCCCATTTCGGGGACAAGCGTTGGGCGCGGTTCGCGGGCCTCAAG
GCCCAGTTTGACCCGAGGGCCATGCTGGCCACCGGGCAGGGCATCTTCCCGCCGCCGCCG
CTCCTGTCCGATTCTTGAGAATGAATGGCAGGACCGCTTAACATGACATTCAGGAAGCTA
GCTTAGGTGTATGTATGTATGTAACTGGCCATCACAGAGAGCAGCAGGATTAGGTAGTGT
GCATGGAGGTGTATAGAAGATGTCCGTTGGTGTCATGTATGTGGCGCGCATTGTCAGCTT
AACTCTGAATCGGTTGGTGATGTACAGAGGAATGCGTCGCGTCCATGCAACTATGTAGTC
ACATCTTTTGTGCTGTGTTGTGCTGGTAAAAAAACAGTTTTCCCTCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_25659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56810.1	535	3e-59	protein\|cytokinin dehydrogenase precursor, putative, expressed
Brachypodium v1_2	Bradi2g51530.1	550	2e-61
Arabidopsis v10	None