barSeed - Barley Seed Development Database

Probe CUST_4012_PI390587928

Source Contig U35_37344

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4012_PI390587928	Hv_44K_v2	TCAAATAGGAAGGTGAACATGTGCAGACTCTCCGGGTTAAGTTCCATTGGAAACCTACAT	122	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.333	0.551	1.438	2.198	1.324	2.097
Raw	3.434	10.906	31.203	62.766	16.062	27.017

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_37344	556	3e-25	123 - 182	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_37344 556 Hv_44K_v2
CACCTGGCTAAGTTCCATTGGAAACCTACATGTGGTGAGCCTTTCCATCCCTGCTGATTA
ACGTGTAAGTGTTGACACCAAAACCGTCCATGTGCCTGTAGTTGAGTGGAATGCCAACAT
CGTCAAATAGGAAGGTGAACATGTGCAGACTCTCCGGGTTAAGTTCCATTGGAAACCTAC
ATGTGGTGTGAAGTGCCTCTTGGATGATGAAGCCGTTACTGTTGGAGGCACCTGCCACAC
CCATGCCACAAAGGACTTGACTGATTCTATTGCAGCTGGGAATTACCCAGAATGGAAGCT
TTTCATCCAGACCATTGATGCTGATCACGAGGATAGATTTGACTTTGACCCTCTTGATGT
CACCAAGACCTGGCCAGAGGACATCATCCCACTGCAACCAGTTGGACGGATGGTACTGAA
CAAGAACATTGACAATTTCTTCGCGGAAAATGAACAGCTTGCTTTCTGCCCAGCAGTCAC
TGTCCCTGGAATCCACTACTCTGATGATAAGCTGCTCCAGACAAGGATCTTCTCATATGC
TGATACCCAAAGGCAC

Homology of Contig U35_37344 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51150.2	476	1e-91	protein\|catalase isozyme B, putative, expressed
Brachypodium v1_2	Bradi1g29800.2	493	1e-92
Arabidopsis v10	AT4G35090.1	492	3e-80	\| Symbols: CAT2 \| catalase 2 \| chr4:16700937-16703215 REVERSE LENGTH=492