- Probe CUST_40119_PI390587928
- Source Contig U35_49613
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40119_PI390587928 | Hv_44K_v2 | AAGTCTATCACCAAAAAGGATCTCGTAGACTACATTCAAAATCATTACACGGCTTCTAGA | 314 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.217 | 0.927 | 1.384 | 1.123 | 0.409 | 0.397 |
| Raw | 380.874 | 403.020 | 599.547 | 755.212 | 98.295 | 103.746 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4012.4 | 1292 | 2e-24 | 567 - 626 | 100 | 60 / 60 | plus | ABC02823 ABC44733 |
| MLOC | MLOC_4012.2 | 1451 | 2e-24 | 510 - 569 | 100 | 60 / 60 | plus | ABC02823 ABC44733 |
| MLOC | MLOC_4012.3 | 1918 | 2e-24 | 670 - 729 | 100 | 60 / 60 | plus | ABC02823 ABC44733 |
| MLOC | MLOC_4012.1 | 1910 | 2e-24 | 675 - 734 | 100 | 60 / 60 | plus | ABC02823 ABC44733 |
| JLOC1 | JLOC1_2435.1 | 1785 | 8e-25 | 527 - 586 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51440 | 374 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44733 | 619 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | ABC44733 |
| Harvest21 | ABC02823 | 2091 | 3e-25 | 874 - 933 | 100 | 60 / 60 | plus | ABC02823 |
| Harvest35 | U35_49613 | 374 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45628 | 619 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15129 | 2115 | 3e-25 | 874 - 933 | 100 | 60 / 60 | plus |
Contig Sequence (374 bp)
>U35_49613 374 Hv_44K_v2 TCAACGCGCGCGTCCGCCGCCTCGAGCACCCGGACCCCCGCTTCCTCCGCTACGCCTACA CCTCGCGGGAGCAGACCACCTACTACGCCAAGGTGCTCGACAAGGACGTGCCACGCGCGA TGAATGTCCTCGCCGACATTTTGCAGCACTCCAAGCTCCAAGACGACCGCATTGAACGTG AGCGGGGCGTAATTCTCCGAGAGATGGAGGAGGTTCAGGGACAGTCTGAGGAAGTTATAT TCGATCATCTCCATGCAACTGCATTCCAGTATACTTCTCTTGGCAGGCCAATCTTGGGTT CTGCTGATAACGTCAAGTCTATCACCAAAAAGGATCTCGTAGACTACATTCAAAATCATT ACACGGCTTCTAGA
Homology of Contig U35_49613 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g11410.1 | 534 | 7e-56 | protein|mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g70180.1 | 531 | 2e-54 | |
| Arabidopsis v10 | None |