barSeed - Barley Seed Development Database

Probe CUST_40118_PI390587928

Source Contig U35_13685

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40118_PI390587928	Hv_44K_v2	TTCCTTCATAGTACTAGCTTGTTATGAGTGAATGTCCTGCCACTTTGAACGTTTAAAAAA	471	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.193	10.887	2.080	0.392	0.103	0.116
Raw	956.579	1173.186	203.830	66.930	4.409	6.439

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61787.1	606	3e-21	484 - 537	100	54 / 54	plus	ABC01220 ABC01242
JLOC1	JLOC1_40393.1	639	2e-21	486 - 539	100	54 / 54	plus
Harvest21	ABC01242	1751	3e-25	1221 - 1280	100	60 / 60	minus	ABC01242
Harvest35	U35_13685	683	3e-25	472 - 531	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_13685 683 Hv_44K_v2
GTACCACTATCACTACCAGTAGCACTCTCCCAGTCCCAGTGTGACTTGCGAGCTCGAGCG
CGCAATGGCGGCTCGCGGTGGGAAGGCCCTGGTCCTGGCCATGCTGATCTCCTTCCTCGC
GGTCCAGGGGACCCTTGGGGATTTCCCATTCCGATGCTGCCACTGCGACGAGTACCGCAG
GTGCAAGAGCAACCATCCAGGCCTGGAAGAAGACCACTGCATCCTGAAATCCTTCAAGAA
CTGCAAGCTGACTTCAACCATGGCTGCCCCAAGGCGGGCTGCAGGCACCGTGTTGGCCCC
GACATGGGTGCGGCCTTCGCAGCCGGTGGTCGCAACCTCGGAGAGGCCGACGGCGCTGGA
GAGGAAACAGCTGCATGAGAGCTGGGCTGCTGGAGAAGAAATATTCGGCCACACCCCAGG
CTGAGAATGCATAATAACTACTGTAGTAGAATAAATAATGTCATGCCATCCTTCCTTCAT
AGTACTAGCTTGTTATGAGTGAATGTCCTGCCACTTTGAACGTTTAAAAAAAAAAAAAAA
ACTCTGGCGGGCACATCAACCCGGCGGTGACCTTCGGGCTGTTCCTGGCGAGGAAGCTGT
CGCTGACGAGGGCGGTGTTCTACATCATCATGCAGTGCCTGGGCGCCATCTGCGGCGCCG
GCGTGGTCAAGGGGTTCCAGCAG

Homology of Contig U35_13685 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None