barSeed - Barley Seed Development Database

Probe CUST_40117_PI390587928

Source Contig U35_49614

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40117_PI390587928	Hv_44K_v2	GATGTGTTTGCTGTTATGGCTGTGGAAGTTGTTTAACCTGCGTTTGGTCAAATTTAGCTG	277	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1274.1	437	2e-24	250 - 309	100	60 / 60	plus	ABC00107 ABC00491 ABC00633 ABC00728
JLOC1	JLOC1_786.2	679	8e-25	327 - 386	100	60 / 60	plus
Harvest21	ABC51441	337	3e-25	278 - 337	100	60 / 60	plus
Harvest21	ABC00728	483	3e-25	232 - 291	100	60 / 60	plus	ABC00728
Harvest21	ABC00107	541	1e-23	229 - 288	98	59 / 60	plus	ABC00107
Harvest35	U35_49614	337	3e-25	278 - 337	100	60 / 60	plus
Harvest35	U35_283	474	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_122	1191	3e-25	1033 - 1092	100	60 / 60	plus
Harvest35	U35_121	575	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_30	549	1e-23	237 - 296	98	59 / 60	plus

Contig Sequence (337 bp)

>U35_49614 337 Hv_44K_v2
ACGATCAGGGCAACCGCACCACGCCGTCCTATGTCGCCTTCACCGACACCGAGCGGCTCA
TCGGCGACGCCGCTAAGAACCAGGTCGCCATGAACCCGATCAACACCGTGTTCGATGCGA
TGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGA
GGCAGCGATCCAAGTAGGCGCCTTGGAGCAGGGAATGCATCATCTTTACATCAGGCAGCT
AGGCACCGAGGGATGACGGCATGATCTAGTGATTCCTGATGTGTTTGCTGTTATGGCTGT
GGAAGTTGTTTAACCTGCGTTTGGTCAAATTTAGCTG

Homology of Contig U35_49614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None