barSeed - Barley Seed Development Database

Probe CUST_40116_PI390587928

Source Contig U35_13686

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40116_PI390587928	Hv_44K_v2	TTTTCACTTATTCTTACAGTATTGAACATGTCATACCTGTGCCCCAGCCTGCGCGGTTAC	1395	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78724.3	1846	2e-24	1104 - 1163	100	60 / 60	plus	ABC00153 ABC26615
MLOC	MLOC_78724.2	2066	2e-24	1487 - 1546	100	60 / 60	plus	ABC00153 ABC26615
MLOC	MLOC_78723.3	2535	2e-24	1104 - 1163	100	60 / 60	plus	ABC00153 ABC26615
MLOC	MLOC_78724.4	775	2e-24	703 - 762	100	60 / 60	plus	ABC00153
JLOC1	JLOC1_52465.9	1556	8e-25	705 - 764	100	60 / 60	plus
JLOC1	JLOC1_52465.7	2036	8e-25	705 - 764	100	60 / 60	plus
JLOC1	JLOC1_52465.5	1955	8e-25	1104 - 1163	100	60 / 60	plus
JLOC1	JLOC1_52465.4	2416	8e-25	1104 - 1163	100	60 / 60	plus
JLOC1	JLOC1_52465.3	2017	8e-25	705 - 764	100	60 / 60	plus
JLOC1	JLOC1_52465.2	1974	8e-25	1104 - 1163	100	60 / 60	plus
Harvest21	ABC00153	1480	3e-25	1396 - 1455	100	60 / 60	plus	ABC00153
Harvest35	U35_13686	1480	3e-25	1396 - 1455	100	60 / 60	plus

Contig Sequence (1480 bp)

>U35_13686 1480 Hv_44K_v2
GCTCATCCCTCCACCAACCACGAGTCAAACCCACCGCAGCAAAGGGACAGCGGCGGAGAT
GTCGGGCCGTGGCAAGGGAGGAAAGGGGCTCGGAAAGGGCGGCGCCAAGCGCCACCGGAA
GGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGCCTGGCGCGCCG
CGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGAT
CTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGAC
CGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGTTT
CGGCGGTTAGGCCCGCCAGATCCGTCGCCCGCGGAAACCAGATTAGGAGCTAGCCTCTGT
TTAGGATTCATGTTCTGTTGTGGGGTAATTGCAGTATCTCGCTGTCTTGTTTCCTCTGTT
CTGCTGTTTGGTGCATGGACAAACTGATCACTGCTGGTTTGCTAGAATGGAATGGAATGG
AAATTTCACCCTTGAAAAAAAAAAAAAAAAAATCTCCTAGCTCTGCTGATATCCCGGTTC
TGTCGCTCTGTATTATCTTTGTCCTCAAATTAATTGATGTGTGCTACAGCGTTCGATTTG
AATGATGCCTGAATTTTTTCTATCTGAATTTCGTAAGTCCACCACAATCTGATTTAAATC
CCAAATTCGAGAACCCGTTGAGAAGTAGCTGCAGAACAGAGAGGAACTGAACCGTGTGTT
GATAATATGGTAGAAGTGTCTTGATAATTGTTCGTTTATTGATGAAAAGAATGTGGCACA
AATTGCAGGTAACCATAGGCGCCATGGAGTGGGGGAAAGTCTACTTGGTGGAAGACGTTG
TGACGGAGGCTGCAGCCTGCAGTGGATGGAACAAAGCGAAAAACTGGCCACAGACCTGTT
GAAAATGGCTGCTGAAAATCTAGGAAGGTTGAAACGGAGCTGCTCGTCCAAATGCAGGTC
TTCTTCTCTTGCCCGGGAAACTGGTGGAGCGTTCTTCTTTGATTAATTATATTAGAGTGA
CCCAAATTATTAAGACAAAACCAATCCACAATCATATCTTTTATCTTCATATTTCAATAT
TTGCATAGCAACCGCCGTCGATACAAATTCTTCAATAGTAAACAAACAATTTTTTTGCTA
TCCTCTAATATTACAGGGTGTTGACCATAATATGACAAGCATAGTCAAAAAATAATGATG
ATGAGGTCCTTGTTCTTGCTGCTTGTAACAGTACATATGCTCTGGATCTGGGTAGAGAAT
ATTTAATGAATTATTCATCTAATTGCATCGTGCATCTTTCTTAGAAGAAAAATAAGTTGT
GCATCTGTGTTGTGTTTTTCACTTATTCTTACAGTATTGAACATGTCATACCTGTGCCCC
AGCCTGCGCGGTTACGTCTCGAACAATCACACCTACATTT

Homology of Contig U35_13686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None