barSeed - Barley Seed Development Database

Probe CUST_40114_PI390587928

Source Contig U35_13687

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40114_PI390587928	Hv_44K_v2	TGTGTTTGCCGAGTTGTATGGTTCCAGAGTTAACAAAATTGTCCTTCTGTTATGAAAAAA	553	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248156.1	413	7e-23	289 - 345	100	57 / 57	plus	ABC00009 ABC00020 ABC00030 ABC00059 ABC00117 ABC00122 ABC00131 ABC00142 ABC00153 ABC00159 ABC00173 ABC00174 ABC00197 ABC00316 ABC00499 ABC00500 ABC00659 ABC00700 ABC27134
MLOC	MLOC_51744.1	431	7e-23	153 - 209	100	57 / 57	minus	ABC00131
JLOC1	JLOC1_33082.1	481	4e-23	203 - 259	100	57 / 57	minus
Harvest21	ABC00131	639	3e-25	551 - 610	100	60 / 60	plus	ABC00131
Harvest35	U35_13687	655	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_13687 655 Hv_44K_v2
GCCGACCAAATCCCCGCTCCAAAATCCCCAAATCCCACCCACTCACCTCCCAAGCCACTC
GGAGCAGGCAGCCATGTCGGGGCGCGGCAAGGGCGGCAAGGGGCTCGGCAAGGGCGGCGC
GAAGCGCCACCGCAAGGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCG
GAGGCTGGCCCGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCG
CGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCA
CGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG
CACCCTGTACGGCTTCGGCGGCTGAAGAGCCGCGGCGCTGGCTGACCGTGGCGCACAAGC
CCTGGCTCGCGGTCAAGAAACTGCCGGAGGGGAGAAATCTGTAGTTCATCTAGGTCCTGT
GCCTTGTATGCTTGGTAGTAGGACCCTATGTTTAGTAGTTTGCTTCCGTGTTCTGAACCT
GATGGGCAAATACTGTGTTTGCCGAGTTGTATGGTTCCAGAGTTAACAAAATTGTCCTTC
TGTTATGAAAAAAAAAAAAACCGACTACGCTGTTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13687 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None