barSeed - Barley Seed Development Database

Probe CUST_40113_PI390587928

Source Contig U35_13688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40113_PI390587928	Hv_44K_v2	TCTGTTTCCTCTGTACTTCGAACTGAATCGTGCAACAAAGATATTCGCTTCTGTCGTTGG	448	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251417.1	521	2e-24	462 - 521	100	60 / 60	plus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30671 ABC32179 ABC43349
MLOC	MLOC_19874.1	449	2e-24	168 - 227	100	60 / 60	plus	ABC00160 ABC29958
JLOC1	JLOC1_13778.1	449	8e-25	168 - 227	100	60 / 60	plus
Harvest21	ABC00160	530	3e-25	449 - 508	100	60 / 60	plus	ABC00160
Harvest21	ABC29958	487	4e-24	412 - 471	98	59 / 60	plus	ABC29958
Harvest35	U35_13688	528	3e-25	449 - 508	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_13688 528 Hv_44K_v2
GCACGAGGCCCCACCGCCCCTCCCACTTCCACATCTGCTCGCAGCTCGAAGAGGATCAGT
CGTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGTCTGGGCAAGGGCGGCGCCAAGC
GCCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGCC
TGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCG
TGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCC
GCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGACGCACCC
TCTACGGATTCGGCGGCTAGGCCCGCTGGTGGTCGTCAGTCTTCCTGCAGACTCCGATTG
CTTGATGAGGCCGCGACTTGTGTAGTTCTCTGTTTCCTCTGTACTTCGAACTGAATCGTG
CAACAAAGATATTCGCTTCTGTCGTTGGAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39410.1	104	9e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g19360.1	104	4e-51
Arabidopsis v10	AT5G59970.1	103	5e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103