barSeed - Barley Seed Development Database

Probe CUST_40112_PI390587928

Source Contig U35_49617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40112_PI390587928	Hv_44K_v2	TGGAATGATACTGCATTCCTTGCTTCAATTGACGTAATGGATTACTCTTTACTTGTTGGT	419	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.403	1.516	1.089	1.148	0.334	0.279
Raw	36.924	65.530	39.146	65.547	6.040	5.166

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369262	2200	2e-24	1466 - 1525	100	60 / 60	plus	None
Harvest21	ABC51448	482	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_49617	482	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_49617 482 Hv_44K_v2
AAGGAGGCAAGAGTAATGTTTTCTTTGCAAAATCACTGGATGACAGGTTCATAATTAAAC
AGGTTACCAAAACGGAATTGGAATCTTTCATGAAATTTGCTCCAGATTATTTTAAATATC
TGTCCGAGTCAATTGGCACTGGCAGTCCTACTTGCATTGCAAAAATTCTTGGTATTTATC
AGGTTAAGAGCCTGAAAGGCGGAAAGGAGGTGAGAATGGATGTTCTGGCCATGGAAAATC
TTTTATTTGAACGTCGTGTGACAAGATTATATGATTTGAAGGGCTCAACGAGATCACGGT
ATAACCCTGATTCAAATGGTAGCGATAAAGTACTTCTTGACGAGAACTTGCTTGAAGCGA
TGCCTACTTCCCCTATTTTTGTCGGGAATAAGGCAAAGCGACTTCTGGAGAGAGCTGTTT
GGAATGATACTGCATTCCTTGCTTCAATTGACGTAATGGATTACTCTTTACTTGTTGGTG
TT

Homology of Contig U35_49617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g28140.1	1819	7e-92	protein\|1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed
Brachypodium v1_2	Bradi1g60357.1	1819	4e-96
Arabidopsis v10	AT3G14270.1	1791	6e-83	\| Symbols: FAB1B \| phosphatidylinositol-4-phosphate 5-kinase family protein \| chr3:4754624-4761185 FORWARD LENGTH=1791