- Probe CUST_40110_PI390587928
- Source Contig U35_49618
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40110_PI390587928 | Hv_44K_v2 | TGTATGGCTGTACCCTATACGTATGGTGTATTCCCTCCTTCCTAAATAGTTCTCTGTTCC | 162 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.673 | 0.571 | 0.247 | 1.323 | 3.111 | 5.550 |
| Raw | 80.442 | 94.369 | 43.838 | 363.142 | 294.332 | 579.092 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56202.1 | 882 | 2e-24 | 766 - 825 | 100 | 60 / 60 | plus | ABC51450 |
| JLOC1 | JLOC1_36335.1 | 964 | 8e-25 | 616 - 675 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51450 | 248 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus | ABC51450 |
| Harvest35 | U35_49618 | 248 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus |
Contig Sequence (248 bp)
>U35_49618 248 Hv_44K_v2 ATTCCGGTGGCTATGGTGGCAATGGTGCTGGTGGTTATAATGGCGAAGGAGCGTTTGGCG GCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGCGGATTCCGAGGTGGACGGACGGAGA AGAAGCAGGACGGTGGCGGCAAAAACTGAAGCCGCCCGTACTTGTATGGCTGTACCCTAT ACGTATGGTGTATTCCCTCCTTCCTAAATAGTTCTCTGTTCCTAAATAATTAAAAAAAAA AAAAAAAA
Homology of Contig U35_49618 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |