barSeed - Barley Seed Development Database

Probe CUST_40108_PI390587928

Source Contig U35_25660

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40108_PI390587928	Hv_44K_v2	ATTTGTTCATGGAAGCATGCATGCATCAAAGCATGAACTCTTGTTCTCTCTTGCAAAAAA	832	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.129	2.314	1.528	0.992	0.415	0.397
Raw	18.950	65.845	34.910	39.996	3.355	3.976

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17296.1	812	7e-23	736 - 792	100	57 / 57	plus	None
MLOC	MLOC_17296.2	1036	7e-23	895 - 951	100	57 / 57	plus	None
JLOC1	JLOC1_11940.1	1023	4e-23	885 - 941	100	57 / 57	plus
Harvest35	U35_25660	903	3e-25	833 - 892	100	60 / 60	plus

Contig Sequence (903 bp)

>U35_25660 903 Hv_44K_v2
GGGAGTACGCGGCGGACGTTGGGTACGTGGAGTTCCTGTCGCGCGTGAACCGGGTGGAGG
AGGAGGCGCGCCGGAGCGGCAGCTGGGACGCGCCGCACCCGTGGCTCAACCTCTTCGTCT
CCGCGCGCGACATCGCCGACTTCGACCGCGCCGTGCTCGCCGGCATGCTCGCCGACGGCA
TCGACGGGCCCATGCTCATCTACCCCATGCTCAAGAGCAAGTGGGACCCGAACACGTCGG
TGGCGCTGCCGGAGGGCGAGGTGTTCTACCTGGTGGCGCTGCTGCGGTTCTGCCCGGGCG
GTGGCGCGGCGGCGGCGGAGGAGCTGGTGGCGCAGAACGGGGCCATCGTCGACGCCTGCC
GCCGCAACGGCTACGACTTCAAGACCTACTTCCCGCACTACCGCGCCGAGGCCGACTGGG
CGCGCCACTTCGGCCCCAACTGGGCCCGCTTCCTCGACCGCAAGGCCCGCTACGACCCGC
TCGCGATCCTCGCCCCGGGCCAGAAGATCTTCGCCAGGACCCCTTCCTCCTCCCGCCTCG
ACCGATCATAGCTCATAGCTAAACGTGGTTGCCGGCCAAGCCATGATGGTCATCAAGATC
TCGATCCATCCACAACATAAGAAGATGATGATGATGATTATAGGGTCATTATTCATTAGG
CACGCACATTGGGGGGACAAAAGGGGCTCCATGGATGCTGTAAGGGACTGTAGTAGGGAA
GGGGTTGCAAAGAAAACCAAACATGTCGCCTTCTTTTCGTCGCTTCGCTTCCGTCAGGCA
GCAGCTAACAGGCCCCGTCCCCTAATTAGCAATTCAGCTAACTAACTAAGTAATTTGTTC
ATGGAAGCATGCATGCATCAAAGCATGAACTCTTGTTCTCTCTTGCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_25660 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g35860.1	621	1e-92	protein\|cytokinin dehydrogenase precursor, putative, expressed
Brachypodium v1_2	Bradi3g37690.1	514	2e-94
Arabidopsis v10	AT5G21482.1	524	7e-65	\| Symbols: CKX7, ATCKX5 \| cytokinin oxidase 7 \| chr5:7226842-7230052 FORWARD LENGTH=524